CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG003669.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG003669.1
T133030_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
cbt
M03705_2.00
Drosophila melanogaster
DMCACRCCCMY
RKGGGYGTGKH
SELEX
Nitta et al.(2015)
cbt_1
0.763
0.710
cbt
M03706_2.00
Drosophila melanogaster
RMCRCGCCCMCHH
DDGKGGGCGYGKY
SELEX
Nitta et al.(2015)
cbt_2
0.763
0.710
KLF15
M04511_2.00
Homo sapiens
VHCMCVCCCMYN
NRKGGGBGKGDB
SELEX
Yin et al.(2017)
KLF15_eDBD_HT-SELEX
0.757
0.768
KLF15
M04513_2.00
Homo sapiens
VMCMCDCCCMCH
DGKGGGHGKGKB
SELEX
Yin et al.(2017)
KLF15_FL_HT-SELEX
0.757
0.768
KLF15
M08323_2.00
Homo sapiens
SSCYNBCYCCDCCYC
GRGGHGGRGVNRGSS
ChIP-seq
Schmitges et al.(2016)
Q9UIH9.MEME
0.757
0.768
KLF15
M08907_2.00
Homo sapiens
CCNYYCCYNBCYCCKCCYY
RRGGMGGRGVNRGGRRNGG
Misc
Kulakovskiy et al.(2013)
KLF15_HUMAN.H11MO.0.A
0.757
0.768
Klf15
M08987_2.00
Mus musculus
CCNYYCCYNBCYCCKCCYY
RRGGMGGRGVNRGGRRNGG
Misc
Kulakovskiy et al.(2013)
KLF15_MOUSE.H11MO.0.A
0.757
0.768
KLF15
M10241_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF15_Q2
0.757
0.768
KLF15
M04512_2.00
Homo sapiens
RCCMCGCCCMCH
DGKGGGCGKGGY
SELEX
Yin et al.(2017)
KLF15_eDBD_Methyl-HT-SELEX
0.757
0.768
KLF15
M04514_2.00
Homo sapiens
GCCMCGCCCMCN
NGKGGGCGKGGC
SELEX
Yin et al.(2017)
KLF15_FL_Methyl-HT-SELEX
0.757
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG003669.1
C2H2 ZF
280
304
HQCSHPGCSKTYTKSSHLKAHFRRH
Alligator_sinensis_CCG003669.1
C2H2 ZF
310
334
YICLWPNCDWRFSRSDELSRHKRSH
Alligator_sinensis_CCG003669.1
C2H2 ZF
340
362
YQCMACEKKFTRSDHLAKHMKIH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Tal_R006156
Tyto alba
Tal_R006156
I
0.780
ENSACAG00000012356
Anolis carolinensis
ENSACAG00000012356
I
0.780
CLEC005479
Cimex lectularius
CLEC005479
N
0.776
ENSGALG00000021702
Gallus gallus
ENSGALG00000021702
I
0.774
ENSMGAG00000003006
Meleagris gallopavo
ENSMGAG00000003006
I
0.774
ENSFALG00000000608
Ficedula albicollis
ENSFALG00000000608
N
0.771
Cmyd_10010595
Chelonia mydas
Cmyd_10010595
I
0.768
L798_11927
Zootermopsis nevadensis
L798_11927
I
0.767
klf15.2
Xenopus tropicalis
XB-GENE-1018580
I
0.767
Ogr18174
Ophisaurus gracilis
Ogr18174
I
0.764
Pvit_06090
Pogona vitticeps
Pvit_06090
I
0.764
cbt
Drosophila sechellia
FBgn0171577
I
0.763
cbt
Drosophila virilis
FBgn0206865
I
0.763
cbt
Drosophila yakuba
FBgn0233632
I
0.763
cbt
Drosophila mojavensis
FBgn0140770
I
0.763
cbt
Drosophila simulans
FBgn0194348
I
0.763
cbt
Drosophila ananassae
FBgn0101744
I
0.763
cbt
Drosophila erecta
FBgn0116778
I
0.763
cbt
Drosophila melanogaster
FBgn0043364
D
0.763
KLF15
Meleagris gallopavo
ENSMGAG00000007616
I
0.761
klf15
Takifugu rubripes
ENSTRUG00000014976
I
0.761
ENSPFOG00000012815
Poecilia formosa
ENSPFOG00000012815
I
0.761
ENSXMAG00000007908
Xiphophorus maculatus
ENSXMAG00000007908
I
0.761
klf15
Oryzias latipes
ENSORLG00000001165
I
0.761
ENSONIG00000003215
Oreochromis niloticus
ENSONIG00000003215
I
0.761
ENSONIG00000009164
Oreochromis niloticus
ENSONIG00000009164
I
0.761
Afo_R011755
Aptenodytes forsteri
Afo_R011755
I
0.761
Gfo_R014652
Geospiza fortis
Gfo_R014652
I
0.761
Cmyd_10013831
Chelonia mydas
Cmyd_10013831
I
0.761
Pvit_11468
Pogona vitticeps
Pvit_11468
I
0.761
Tal_R002960
Tyto alba
Tal_R002960
I
0.761
ENSAPLG00000012971
Anas platyrhynchos
ENSAPLG00000012971
I
0.761
klf15
Gasterosteus aculeatus
ENSGACG00000003717
I
0.761
ENSFALG00000012601
Ficedula albicollis
ENSFALG00000012601
I
0.761
ENSGALG00000006245
Gallus gallus
ENSGALG00000006245
I
0.761
Aan_R004458
Calypte anna
Aan_R004458
I
0.761
Brh_R002160
Buceros rhinoceros
Brh_R002160
I
0.761
Alligator_sinensis_CCG019865.1
Alligator sinensis
Alligator_sinensis_CCG019865.1
I
0.761
cbt
Drosophila willistoni
FBgn0226609
I
0.760
ENSXMAG00000001323
Xiphophorus maculatus
ENSXMAG00000001323
I
0.757
KLF15
Tursiops truncatus
ENSTTRG00000008498
I
0.757
klf15.S
Xenopus laevis
XB-GENE-854150
I
0.757
klf15
Xenopus tropicalis
XB-GENE-854149
I
0.757
NEMVEDRAFT_v1g82548
Nematostella vectensis
NEMVEDRAFT_v1g82548
I
0.757
ENSP00000296233
Macaca fascicularis
ENSP00000296233
I
0.757
KLF15
Takifugu rubripes
ENSTRUG00000006529
I
0.757
Ogr01993
Ophisaurus gracilis
Ogr01993
I
0.757
ENSPFOG00000003698
Poecilia formosa
ENSPFOG00000003698
I
0.757
KLF15
Equus caballus
ENSECAG00000021092
I
0.757
ENSDORG00000016283
Dipodomys ordii
ENSDORG00000016283
I
0.757
KLF15
Dasypus novemcinctus
ENSDNOG00000036157
I
0.757
KLF15
Homo sapiens
ENSG00000163884
D
0.757
KLF15
Gasterosteus aculeatus
ENSGACG00000011317
I
0.757
ENSLACG00000013240
Latimeria chalumnae
ENSLACG00000013240
I
0.757
ENSLACG00000009512
Latimeria chalumnae
ENSLACG00000009512
I
0.757
ENSGMOG00000000921
Gadus morhua
ENSGMOG00000000921
I
0.757
klf15
Danio rerio
ENSDARG00000091127
I
0.757
ENSCSAG00000008037
Chlorocebus sabaeus
ENSCSAG00000008037
I
0.757
ENSAMXG00000016240
Astyanax mexicanus
ENSAMXG00000016240
I
0.757
ENSAMXG00000012874
Astyanax mexicanus
ENSAMXG00000012874
I
0.757
ENSAMEG00000006403
Ailuropoda melanoleuca
ENSAMEG00000006403
I
0.757
KLF15
Bos taurus
ENSBTAG00000008313
I
0.757
KLF15
Canis familiaris
ENSCAFG00000003807
I
0.757
KLF15
Cavia porcellus
ENSCPOG00000005315
I
0.757
KLF15
Callithrix jacchus
ENSCJAG00000006941
I
0.757
ENSSHAG00000007635
Sarcophilus harrisii
ENSSHAG00000007635
I
0.757
KLF15
Loxodonta africana
ENSLAFG00000011970
I
0.757
ENSPANG00000026096
Papio anubis
ENSPANG00000026096
I
0.757
KLF15
Ochotona princeps
ENSOPRG00000005237
I
0.757
KLF15
Otolemur garnettii
ENSOGAG00000000703
I
0.757
KLF15
Procavia capensis
ENSPCAG00000006301
I
0.757
ENSPPYG00000013455
Pongo abelii
ENSPPYG00000013455
I
0.757
Klf15
Rattus norvegicus
ENSRNOG00000017808
I
0.757
KLF15
Pteropus vampyrus
ENSPVAG00000004109
I
0.757
ENSNLEG00000001047
Nomascus leucogenys
ENSNLEG00000001047
I
0.757
KLF15
Ornithorhynchus anatinus
ENSOANG00000014825
I
0.757
ENSLOCG00000013716
Lepisosteus oculatus
ENSLOCG00000013716
I
0.757
ENSLOCG00000011807
Lepisosteus oculatus
ENSLOCG00000011807
I
0.757
KLF15
Macaca mulatta
ENSMMUG00000003721
I
0.757
KLF15
Myotis lucifugus
ENSMLUG00000010178
I
0.757
ENSMPUG00000017390
Mustela putorius furo
ENSMPUG00000017390
I
0.757
Klf15
Mus musculus
ENSMUSG00000030087
D
0.757
LotgiG100140
Lottia gigantea
LotgiG100140
I
0.756
LDEC016289
Leptinotarsa decemlineata
LDEC016289
I
0.756
HHAL008603-PA
Halyomorpha halys
HHAL008603-PA
N
0.756
YQE_06283
Dendroctonus ponderosae
YQE_06283
I
0.756