CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Minc12474
(
Meloidogyne incognita
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Minc12474
T146450_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc12474a
C2H2 ZF
161
183
YVCERCGIRCKKPSMLKKHLRSH
Minc12474a
C2H2 ZF
189
213
FTCMTCNFSFKTKGNLTKHLVSKTH
Minc12474a
C2H2 ZF
621
643
FHCDMCDRKFRKESELLLHKQTH
Minc12474a
C2H2 ZF
663
686
FQCSECPTVVRSKTMLNRHTESVH
Minc12474a
C2H2 ZF
992
1015
TRCQLCDLNFDSPAQLSVHFHADH
Minc12474a
C2H2 ZF
1024
1048
FRCSRRNCEKVFPSRESLRAHIYAH
Minc12474b
C2H2 ZF
113
136
TRCQLCDLNFDSPAQLSVHFHADH
Minc12474b
C2H2 ZF
145
169
FRCSRRNCEKVFPSRESLRAHIYAH
Minc12474c
C2H2 ZF
143
166
HVCVECDAGFTTESALQAHRERQH
Links
Other
C2H2 ZF
family TFs
Other
Meloidogyne incognita
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc02659
Meloidogyne incognita
Minc02659
N
0.827
Minc02686
Meloidogyne incognita
Minc02686
N
0.827
Minc12475
Meloidogyne incognita
Minc12475
N
0.827
augustus_masked-nMf.1.1.scaf03776-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03776-processed-gene-0.0
N
0.827
maker-nMf.1.1.scaf10017-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf10017-augustus-gene-0.4
N
0.827
MhA1_Contig179.frz3.gene31
Meloidogyne hapla
MhA1_Contig179.frz3.gene31
N
0.818