CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nRc.2.0.1.g33153
(
Romanomermis culicivorax
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nRc.2.0.1.g33153
T155502_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nRc.2.0.1.t33153-RA
C2H2 ZF
18
40
HQCPTCYKVFVSTKGLQQHSIIH
nRc.2.0.1.t33153-RA
C2H2 ZF
46
68
FNCEICGKPFRFKSNLFEHRSIH
nRc.2.0.1.t33153-RA
C2H2 ZF
74
96
YVCPFCGKTCRLKGNLKKHLKTH
Links
Other
C2H2 ZF
family TFs
Other
Romanomermis culicivorax
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
EFV59471
Trichinella spiralis
EFV59471
N
0.778
D917_09259
Trichinella nativa
D917_09259
N
0.778
D918_06537
Trichuris suis
D918_06537
N
0.774
TMUE_s0035003400
Trichuris muris
TMUE_s0035003400
N
0.774
TTRE_0000415001
Trichuris trichiura
TTRE_0000415001
N
0.774
SBAD_0000635801
Soboliphyme baturini
SBAD_0000635801
I
0.771
BXY_1109100
Bursaphelenchus xylophilus
BXY_1109100
N
0.758
L596_g623
Steinernema carpocapsae
L596_g623
I
0.757