CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ECPE_0001445601
(
Echinostoma caproni
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ECPE_0001445601
T167549_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ONECUT1
M02943_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_1
0.924
0.924
ONECUT1
M02944_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_2
0.924
0.924
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.924
0.924
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.924
0.924
ONECUT1
M03715_2.00
Homo sapiens
HRATCGATAHH
DDTATCGATYD
SELEX
Nitta et al.(2015)
ONECUT1_1
0.924
0.924
ONECUT1
M04673_2.00
Homo sapiens
NNATCGATYN
NRATCGATNN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_HT-SELEX
0.924
0.924
ONECUT1
M04675_2.00
Homo sapiens
NNCGATCGATAN
NTATCGATCGNN
SELEX
Yin et al.(2017)
ONECUT1_FL_HT-SELEX
0.924
0.924
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.924
0.924
ONECUT1
M09022_2.00
Homo sapiens
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_HUMAN.H11MO.0.B
0.924
0.924
Onecut1
M09026_2.00
Mus musculus
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_MOUSE.H11MO.0.A
0.924
0.924
Onecut1
M09520_2.00
Mus musculus
NRATCRATMN
NKATYGATYN
Misc
Heinz et al.(2010)
Liver-Hnf6_ERP000394
0.924
0.924
ONECUT1
M10418_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q4
0.924
0.924
ONECUT1
M10419_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q6_01
0.924
0.924
ONECUT1
M04674_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_Methyl-HT-SELEX
0.924
0.924
ONECUT1
M04676_2.00
Homo sapiens
RYSRATCAATAM
KTATTGATYSRY
SELEX
Yin et al.(2017)
ONECUT1_FL_Methyl-HT-SELEX
0.924
0.924
ONECUT2
M02942_2.00
Homo sapiens
DDTATYGATTTTYN
NRAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT2_1
0.913
0.913
ONECUT2
M03714_2.00
Homo sapiens
NDDTATCGATYBNN
NNVRATCGATAHHN
SELEX
Nitta et al.(2015)
ONECUT2_1
0.913
0.913
ONECUT2
M04667_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT2_eDBD_HT-SELEX
0.913
0.913
ONECUT2
M04669_2.00
Homo sapiens
NNSGATCGATAH
DTATCGATCSNN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_1
0.913
0.913
ONECUT2
M04670_2.00
Homo sapiens
NKATYGATYDN
NHRATCRATMN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_2
0.913
0.913
ONECUT2
M10417_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OC2_Q3
0.913
0.913
ONECUT2
M04668_2.00
Homo sapiens
DTATTGATYN
NRATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_eDBD_Methyl-HT-SELEX
0.913
0.913
ONECUT2
M04671_2.00
Homo sapiens
ACSGATCAATAM
KTATTGATCSGT
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_1
0.913
0.913
ONECUT2
M04672_2.00
Homo sapiens
DTATTGATTDN
NHAATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_2
0.913
0.913
ONECUT3
M02945_2.00
Homo sapiens
DWTATYGATTTTYN
NRAAAATCRATAWH
SELEX
Jolma et al.(2013)
ONECUT3_1
0.902
0.902
ONECUT3
M04677_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_HT-SELEX
0.902
0.902
ONECUT3
M04678_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_Methyl-HT-SELEX
0.902
0.902
ceh-48
M01905_2.00
Caenorhabditis elegans
NNATYGRNN
NNYCRATNN
PBM
Weirauch et al.(2014)
pTH8982
0.880
0.880
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ECPE_0001445601-mRNA-1
CUT
1
62
LKRYSIPQAVFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWNWLNEPEYQRMSALR
ECPE_0001445601-mRNA-1
Homeodomain
86
115
KKPRLVFTDIQRRTLHAIFKETKRPSKEMQ
Links
Other
CUT,Homeodomain
family TFs
Other
Echinostoma caproni
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TTAC_0000985401
Hydatigera taeniaeformis
TTAC_0000985401
I
0.978
SMU15004106
Schmidtea mediterranea
SMU15004106
I
0.957
Hsal_07483--XP_624996.2_APIME
Harpegnathos saltator
Hsal_07483--XP_624996.2_APIME
I
0.935
NV10665
Nasonia vitripennis
NV10665
I
0.935
GB44974
Apis mellifera
GB44974
I
0.935
HelroG142791
Helobdella robusta
HelroG142791
I
0.924
ADAC006269
Anopheles darlingi
ADAC006269
I
0.924
onecut1
Oryzias latipes
ENSORLG00000012932
I
0.924
ENSPFOG00000016688
Poecilia formosa
ENSPFOG00000016688
I
0.924
GH24019
Drosophila grimshawi
FBgn0131475
I
0.924
AALB006352
Anopheles albimanus
AALB006352
I
0.924
ASIS013617
Anopheles sinensis
ASIS013617
I
0.924
ASTEI06198
Anopheles stephensi
ASTEI06198
I
0.924
AMIN002125
Anopheles minimus
AMIN002125
I
0.924
AFUN011577
Anopheles funestus
AFUN011577
I
0.924
AATE002650
Anopheles atroparvus
AATE002650
I
0.924
ADIR000966
Anopheles dirus
ADIR000966
I
0.924
ENSONIG00000002661
Oreochromis niloticus
ENSONIG00000002661
I
0.924
ENSXMAG00000018128
Xiphophorus maculatus
ENSXMAG00000018128
I
0.924
ENSCSAVG00000000071
Ciona savignyi
ENSCSAVG00000000071
I
0.924
onecut1
Tetraodon nigroviridis
ENSTNIG00000011370
I
0.913
onecut2
Takifugu rubripes
ENSTRUG00000000677
I
0.913
ENSLACG00000016574
Latimeria chalumnae
ENSLACG00000016574
I
0.913
GPLIN_001402700
Globodera pallida
GPLIN_001402700
I
0.913
ENSAMXG00000015765
Astyanax mexicanus
ENSAMXG00000015765
I
0.913
onecut3b
Danio rerio
ENSDARG00000091059
I
0.902
Onecut3
Mus musculus
ENSMUSG00000045518
I
0.902
onecut3a
Gasterosteus aculeatus
ENSGACG00000012671
I
0.902
ENSFALG00000011399
Ficedula albicollis
ENSFALG00000011399
I
0.902
ENSAMXG00000006507
Astyanax mexicanus
ENSAMXG00000006507
I
0.902
onecut3a
Danio rerio
ENSDARG00000056395
I
0.902
ONECUT3
Gallus gallus
ENSGALG00000028081
I
0.902
onecut3
Xenopus tropicalis
XB-GENE-484505
I
0.902
ONECUT1
Callithrix jacchus
ENSCJAG00000000848
I
0.902
Pvit_09823
Pogona vitticeps
Pvit_09823
I
0.902
ONECUT3
Taeniopygia guttata
ENSTGUG00000000213
I
0.902
onecut3a
Takifugu rubripes
ENSTRUG00000017862
I
0.902
ENSPFOG00000001415
Poecilia formosa
ENSPFOG00000001415
I
0.902
ENSLACG00000017269
Latimeria chalumnae
ENSLACG00000017269
I
0.902
onecut3a
Oryzias latipes
ENSORLG00000004983
I
0.902
ENSXMAG00000012769
Xiphophorus maculatus
ENSXMAG00000012769
I
0.902
ENSONIG00000004792
Oreochromis niloticus
ENSONIG00000004792
I
0.902
CJA05277
Caenorhabditis japonica
CJA05277
I
0.891
ENSGMOG00000012200
Gadus morhua
ENSGMOG00000012200
I
0.880
CRE24704
Caenorhabditis remanei
CRE24704
I
0.880
CRE22230
Caenorhabditis remanei
CRE22230
I
0.880
ceh-48
Caenorhabditis elegans
WBGene00015934
D
0.880
SMU15040258
Schmidtea mediterranea
SMU15040258
I
0.880
TASK_0000912001
Taenia asiatica
TASK_0000912001
I
0.870
TsM_000579900
Taenia solium
TsM_000579900
I
0.870
EmuJ_001065200
Echinococcus multilocularis
EmuJ_001065200
I
0.870
ECANG7_03058
Echinococcus canadensis
ECANG7_03058
I
0.870
HNAJ_0001098701
Hymenolepis nana
HNAJ_0001098701
I
0.848
ENSOPRG00000007398
Ochotona princeps
ENSOPRG00000007398
I
0.848
HmN_000916800
Hymenolepis microstoma
HmN_000916800
I
0.848
PHUM228480
Pediculus humanus
PHUM228480
I
0.837
MhA1_Contig20.frz3.gene53
Meloidogyne hapla
MhA1_Contig20.frz3.gene53
I
0.826
ENSLOCG00000007915
Lepisosteus oculatus
ENSLOCG00000007915
I
0.815
onecutl
Gasterosteus aculeatus
ENSGACG00000013501
I
0.793
ENSGMOG00000005103
Gadus morhua
ENSGMOG00000005103
I
0.783
L596_g1964
Steinernema carpocapsae
L596_g1964
I
0.772
HelroG151232
Helobdella robusta
HelroG151232
I
0.772
scaffold421-EXSNAP2012.16
Pristionchus exspectatus
scaffold421-EXSNAP2012.16
I
0.761
ceh-38
Caenorhabditis elegans
WBGene00000459
I
0.761
NECAME_06517
Necator americanus
NECAME_06517
N
0.739
onecut3b
Takifugu rubripes
ENSTRUG00000008911
I
0.707
TRE_0001030801
Trichobilharzia regenti
TRE_0001030801
I
0.706
PXEA_0000259701
Protopolystoma xenopodis
PXEA_0000259701
I
0.703