Pavir.Ib03954 (Panicum virgatum)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02701 (zf-Dof) IPR003851 Pavir.Ib03954 T172030_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MNB1A
M02677_2.00 		Zea mays
DCTTT
AAAGH		 SELEX
Mathelier et al.(2014)
MA0053.1 		0.579 0.579
MNB1A
M10440_2.00 		Zea mays
NNDCTTTWNNN
NNNWAAAGHNN		 Transfac
Matys et al.(2006)
P$DOF1_01 		0.579 0.579
Dof2
M02674_2.00 		Zea mays
NGCTTT
AAAGCN		 SELEX
Mathelier et al.(2014)
MA0020.1 		0.561 0.561
Dof2
M10436_2.00 		Zea mays
NNDCTTTWNND
HNNWAAAGHNN		 Transfac
Matys et al.(2006)
P$DOF2_01 		0.561 0.561
Dof2
M10437_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DOF_Q2 		0.561 0.561
Q6RK62_WHEAT
M10441_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PBF_Q2_01 		0.526 0.526
DOF2.5
M01212_2.00 		Arabidopsis thaliana
NNNCKTTWNN
NNWAAMGNNN		 PBM
Lambert et al.(2019)
pTH11562 		0.509 0.509
DOF2.5
M06843_2.00 		Arabidopsis thaliana
DYHMCTTTTTN
NAAAAAGKDRH		 Dap-seq
OMalley et al.(2016)
DAG2_col_a 		0.509 0.509
DOF2.5
M06844_2.00 		Arabidopsis thaliana
HWDYHMCTTTTTN
NAAAAAGKDRHWD		 Dap-seq
OMalley et al.(2016)
DAG2_colamp_a 		0.509 0.509
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03954.1.p Dof 187 243

Links

Other Dof family TFs
Other Panicum virgatum TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G061292 Zea mays GRMZM2G061292 I 0.772
Sb01g014530 Sorghum bicolor Sb01g014530 I 0.763
GRMZM2G045678 Zea mays GRMZM2G045678 I 0.754
GRMZM2G451771 Zea mays GRMZM2G451771 I 0.737
BGIOSGA010234 Oryza indica BGIOSGA010234 I 0.719
LPERR03G21700 Leersia perrieri LPERR03G21700 I 0.719
OGLUM03G27090 Oryza glumaepatula OGLUM03G27090 I 0.719
ONIVA03G27230 Oryza nivara ONIVA03G27230 I 0.719
ORGLA03G0243100 Oryza glaberrima ORGLA03G0243100 I 0.719
OS03G0619151 Oryza sativa OS03G0619151 I 0.719
Traes_4AL_573E93FCC Triticum aestivum Traes_4AL_573E93FCC I 0.719
Traes_4BS_4B1025766 Triticum aestivum Traes_4BS_4B1025766 I 0.719
BGIOSGA035911 Oryza indica BGIOSGA035911 I 0.702
LPERR12G14590 Leersia perrieri LPERR12G14590 I 0.702
OMERI12G12140 Oryza meridionalis OMERI12G12140 I 0.702
ORGLA12G0149800 Oryza glaberrima ORGLA12G0149800 I 0.702
ORUFI12G19370 Oryza rufipogon ORUFI12G19370 I 0.702
Sb08g019830 Sorghum bicolor Sb08g019830 I 0.702
Traes_4DS_4CF7C00FE Triticum aestivum Traes_4DS_4CF7C00FE I 0.702
OPUNC03G23930 Oryza punctata OPUNC03G23930 I 0.695
GRMZM2G131897 Zea mays GRMZM2G131897 I 0.684
BRADI1G14570 Brachypodium distachyon BRADI1G14570 I 0.678
Pavir.Ca02552 Panicum virgatum Pavir.Ca02552 I 0.644
OS12G0590700 Oryza sativa OS12G0590700 I 0.636
GSMUA_Achr2G13350_001 Musa acuminata GSMUA_Achr2G13350_001 I 0.579
MNB1A Zea mays MNB1A_MAIZE D 0.579
Dof2 Zea mays GRMZM2G009406 D 0.561
GRMZM2G089850 Zea mays GRMZM2G089850 I 0.561
LPERR08G15690 Leersia perrieri LPERR08G15690 I 0.561
Si030774m.g Setaria italica Si030774m.g I 0.561
Ciclev10016017m.g Citrus clementina Ciclev10016017m.g I 0.561
orange1.1g021502m.g Citrus sinensis orange1.1g021502m.g I 0.561
Pavir.Ba01771 Panicum virgatum Pavir.Ba01771 I 0.561
BRADI3G38980 Brachypodium distachyon BRADI3G38980 I 0.559
Sb07g028850 Sorghum bicolor Sb07g028850 I 0.559
BGIOSGA030959 Oryza indica BGIOSGA030959 I 0.544
OB08G25950 Oryza brachyantha OB08G25950 I 0.544
OGLUM09G14460 Oryza glumaepatula OGLUM09G14460 I 0.544
OMERI09G10600 Oryza meridionalis OMERI09G10600 I 0.544
ONIVA09G14400 Oryza nivara ONIVA09G14400 I 0.544
ORGLA06G0286500 Oryza glaberrima ORGLA06G0286500 I 0.544
ORGLA09G0106100 Oryza glaberrima ORGLA09G0106100 I 0.544
ORUFI09G14860 Oryza rufipogon ORUFI09G14860 I 0.544
Sb02g027480 Sorghum bicolor Sb02g027480 I 0.544
OGLUM01G30020 Oryza glumaepatula OGLUM01G30020 I 0.538
BGIOSGA028889 Oryza indica BGIOSGA028889 I 0.534
OGLUM08G19840 Oryza glumaepatula OGLUM08G19840 I 0.534
OMERI08G14870 Oryza meridionalis OMERI08G14870 I 0.534
ONIVA08G20810 Oryza nivara ONIVA08G20810 I 0.534
OPUNC08G16830 Oryza punctata OPUNC08G16830 I 0.534
ORGLA08G0164300 Oryza glaberrima ORGLA08G0164300 I 0.534
ORUFI08G21040 Oryza rufipogon ORUFI08G21040 I 0.534
OS08G0490100 Oryza sativa OS08G0490100 I 0.534
MDP0000808238 Malus domestica MDP0000808238 I 0.534
MDP0000925497 Malus domestica MDP0000925497 I 0.534
BGIOSGA002935 Oryza indica BGIOSGA002935 I 0.526
Bra004525 Brassica rapa Bra004525 I 0.526
F775_05329 Aegilops tauschii F775_05329 I 0.526
GSMUA_Achr6G19530_001 Musa acuminata GSMUA_Achr6G19530_001 I 0.526
OGLUM01G06520 Oryza glumaepatula OGLUM01G06520 I 0.526
OGLUM01G35670 Oryza glumaepatula OGLUM01G35670 I 0.526
OMERI01G06150 Oryza meridionalis OMERI01G06150 I 0.526
ONIVA01G06900 Oryza nivara ONIVA01G06900 I 0.526
ORGLA01G0056600 Oryza glaberrima ORGLA01G0056600 I 0.526
ORUFI01G06530 Oryza rufipogon ORUFI01G06530 I 0.526
PGSC0003DMG400000786 Solanum tuberosum PGSC0003DMG400000786 I 0.526
PGSC0003DMG400022431 Solanum tuberosum PGSC0003DMG400022431 I 0.526
PRUPE_ppa020903mg Prunus persica PRUPE_ppa020903mg I 0.526
Q6RK62_WHEAT Triticum aestivum Q6RK62_WHEAT D 0.526
Sb08g000330 Sorghum bicolor Sb08g000330 I 0.526
Si002728m.g Setaria italica Si002728m.g I 0.526
Si007011m.g Setaria italica Si007011m.g I 0.526
Solyc04g070960.1 Solanum lycopersicum Solyc04g070960.1 I 0.526
Traes_5BL_44A8BCF95 Triticum aestivum Traes_5BL_44A8BCF95 I 0.526
Traes_5DL_C5D9E96D4 Triticum aestivum Traes_5DL_C5D9E96D4 I 0.526
Ca_00295 Cicer arietinum Ca_00295 I 0.526
Cla001393 Citrullus lanatus Cla001393 I 0.526
Pm009975 Prunus mume Pm009975 I 0.526
Cucsa.046040 Cucumis sativus Cucsa.046040 I 0.526
mgf021583m Mimulus guttatus mgf021583m I 0.526
Eucgr.F02725 Eucalyptus grandis Eucgr.F02725 I 0.526
Gorai.009G170200 Gossypium raimondii Gorai.009G170200 I 0.526
MDP0000866809 Malus domestica MDP0000866809 I 0.526
BRADI4G33000 Brachypodium distachyon BRADI4G33000 I 0.525
30170.m013941 Ricinus communis 30170.m013941 I 0.525
Traes_1DL_56A46D571 Triticum aestivum Traes_1DL_56A46D571 I 0.519
MTR_4g089095 Medicago truncatula MTR_4g089095 I 0.517
OBART10G09450 Oryza barthii OBART10G09450 I 0.517
cassava41591.m1 Manihot esculenta cassava41591.m1 I 0.517
DOF1.2 Arabidopsis thaliana AT1G21340 I 0.509
AT1G28310 Arabidopsis thaliana AT1G28310 I 0.509
DOF2.5 Arabidopsis thaliana AT2G46590 D 0.509
DAG1 Arabidopsis thaliana AT3G61850 I 0.509
BGIOSGA000793 Oryza indica BGIOSGA000793 I 0.509
Bo1g023750 Brassica oleracea Bo1g023750 I 0.509
Bo3g181400 Brassica oleracea Bo3g181400 I 0.509
Bo4g007120 Brassica oleracea Bo4g007120 I 0.509
Bo4g197200 Brassica oleracea Bo4g197200 I 0.509
Bo5g055750 Brassica oleracea Bo5g055750 I 0.509
Bo7g048220 Brassica oleracea Bo7g048220 I 0.509
Bo7g059460 Brassica oleracea Bo7g059460 I 0.509
Bo8g097330 Brassica oleracea Bo8g097330 I 0.509
Bra014297 Brassica rapa Bra014297 I 0.509
Bra014418 Brassica rapa Bra014418 I 0.509
Bra030089 Brassica rapa Bra030089 I 0.509
Bra032891 Brassica rapa Bra032891 I 0.509
Bra039272 Brassica rapa Bra039272 I 0.509
BRADI1G26570 Brachypodium distachyon BRADI1G26570 I 0.509
BRADI2G50370 Brachypodium distachyon BRADI2G50370 I 0.509
fgenesh2_kg.1__2996__AT1G28310.2 Arabidopsis lyrata fgenesh2_kg.1__2996__AT1G28310.2 I 0.509
DAG1 Arabidopsis lyrata fgenesh2_kg.5__2679__AT3G61850.1 I 0.509
GLYMA04G41830 Glycine max GLYMA04G41830 I 0.509
GLYMA06G12950 Glycine max GLYMA06G12950 I 0.509
GLYMA07G31340 Glycine max GLYMA07G31340 I 0.509
GLYMA13G25120 Glycine max GLYMA13G25120 I 0.509
GLYMA13G31560 Glycine max GLYMA13G31560 I 0.509
GLYMA15G07730 Glycine max GLYMA15G07730 I 0.509
GRMZM2G064655 Zea mays GRMZM2G064655 I 0.509
GRMZM2G134545 Zea mays GRMZM2G134545 I 0.509
GRMZM2G449950 Zea mays GRMZM2G449950 I 0.509
GSMUA_Achr10G03030_001 Musa acuminata GSMUA_Achr10G03030_001 I 0.509
GSMUA_Achr10G05890_001 Musa acuminata GSMUA_Achr10G05890_001 I 0.509
GSMUA_Achr11G10790_001 Musa acuminata GSMUA_Achr11G10790_001 I 0.509
GSMUA_Achr8G32880_001 Musa acuminata GSMUA_Achr8G32880_001 I 0.509
LPERR01G27080 Leersia perrieri LPERR01G27080 I 0.509
LPERR03G29630 Leersia perrieri LPERR03G29630 I 0.509
LPERR06G09630 Leersia perrieri LPERR06G09630 I 0.509
LPERR07G13200 Leersia perrieri LPERR07G13200 I 0.509
MLOC_21982 Hordeum vulgare MLOC_21982 I 0.509
MTR_2g013370 Medicago truncatula MTR_2g013370 I 0.509
MTR_8g068210 Medicago truncatula MTR_8g068210 I 0.509
OBART01G31500 Oryza barthii OBART01G31500 I 0.509
OGLUM07G15440 Oryza glumaepatula OGLUM07G15440 I 0.509
OMERI01G28620 Oryza meridionalis OMERI01G28620 I 0.509
ONIVA01G35960 Oryza nivara ONIVA01G35960 I 0.509
ONIVA07G15480 Oryza nivara ONIVA07G15480 I 0.509
ONIVA12G16170 Oryza nivara ONIVA12G16170 I 0.509
OPUNC01G30540 Oryza punctata OPUNC01G30540 I 0.509
OPUNC07G14510 Oryza punctata OPUNC07G14510 I 0.509
ORGLA07G0128800 Oryza glaberrima ORGLA07G0128800 I 0.509
ORUFI01G34710 Oryza rufipogon ORUFI01G34710 I 0.509
OS01G0758200 Oryza sativa OS01G0758200 I 0.509
PGSC0003DMG400021361 Solanum tuberosum PGSC0003DMG400021361 I 0.509
POPTR_0002s07150 Populus trichocarpa POPTR_0002s07150 I 0.509
PRUPE_ppa008850mg Prunus persica PRUPE_ppa008850mg I 0.509
Sb02g034320 Sorghum bicolor Sb02g034320 I 0.509
Sb03g003050 Sorghum bicolor Sb03g003050 I 0.509
Sb05g000310 Sorghum bicolor Sb05g000310 I 0.509
DAG2 Arabidopsis lyrata scaffold_403629.1 I 0.509
TCM_029918 Theobroma cacao TCM_029918 I 0.509
TCM_035473 Theobroma cacao TCM_035473 I 0.509
Traes_2BS_C94BD2E9F Triticum aestivum Traes_2BS_C94BD2E9F I 0.509
TRAES3BF063900020CFD_g Triticum aestivum TRAES3BF063900020CFD_g I 0.509
Ca_19648 Cicer arietinum Ca_19648 I 0.509
Cla000615 Citrullus lanatus Cla000615 I 0.509
Cla020007 Citrullus lanatus Cla020007 I 0.509
Pm022643 Prunus mume Pm022643 I 0.509
27985.m000859 Ricinus communis 27985.m000859 I 0.509
29851.m002375 Ricinus communis 29851.m002375 I 0.509
cassava3181.m1 Manihot esculenta cassava3181.m1 I 0.509
Cucsa.046300 Cucumis sativus Cucsa.046300 I 0.509
Cucsa.260210 Cucumis sativus Cucsa.260210 I 0.509
mgf020517m Mimulus guttatus mgf020517m I 0.509
Aquca_078_00053 Aquilegia coerulea Aquca_078_00053 I 0.509
Bostr.13158s0188 Boechera stricta Bostr.13158s0188 I 0.509
Bostr.25993s0106 Boechera stricta Bostr.25993s0106 I 0.509
Cagra.0050s0039 Capsella grandiflora Cagra.0050s0039 I 0.509
Cagra.0483s0060 Capsella grandiflora Cagra.0483s0060 I 0.509
Cagra.1632s0025 Capsella grandiflora Cagra.1632s0025 I 0.509
Carubv10011507m.g Capsella rubella Carubv10011507m.g I 0.509
Carubv10017642m.g Capsella rubella Carubv10017642m.g I 0.509
Carubv10023459m.g Capsella rubella Carubv10023459m.g I 0.509
evm.TU.supercontig_1117.2 Carica papaya evm.TU.supercontig_1117.2 I 0.509
gene20567-v1.0-hybrid Fragaria vesca gene20567-v1.0-hybrid I 0.509
gene30428-v1.0-hybrid Fragaria vesca gene30428-v1.0-hybrid I 0.509
gene32526-v1.0-hybrid Fragaria vesca gene32526-v1.0-hybrid I 0.509
Gorai.009G252800 Gossypium raimondii Gorai.009G252800 I 0.509
MDP0000122904 Malus domestica MDP0000122904 I 0.509
MDP0000201509 Malus domestica MDP0000201509 I 0.509
MDP0000241840 Malus domestica MDP0000241840 I 0.509
MDP0000308863 Malus domestica MDP0000308863 I 0.509
orange1.1g025998m.g Citrus sinensis orange1.1g025998m.g I 0.509
Pavir.Da01417 Panicum virgatum Pavir.Da01417 I 0.509
Pavir.Ea00244 Panicum virgatum Pavir.Ea00244 I 0.509
SapurV1A.0013s0150 Salix purpurea SapurV1A.0013s0150 I 0.509
SapurV1A.0066s0240 Salix purpurea SapurV1A.0066s0240 I 0.509
SapurV1A.0256s0150 Salix purpurea SapurV1A.0256s0150 I 0.509
SapurV1A.0256s0160 Salix purpurea SapurV1A.0256s0160 I 0.509
SapurV1A.0267s0010 Salix purpurea SapurV1A.0267s0010 I 0.509
Thhalv10001503m.g Eutrema salsugineum Thhalv10001503m.g I 0.509
Thhalv10006092m.g Eutrema salsugineum Thhalv10006092m.g I 0.509
Thhalv10008213m.g Eutrema salsugineum Thhalv10008213m.g I 0.509
PK26086.1 Cannabis sativa PK26086.1 I 0.509
GRMZM2G378490 Zea mays GRMZM2G378490 I 0.508
GSMUA_Achr11G23850_001 Musa acuminata GSMUA_Achr11G23850_001 I 0.508
GSMUA_Achr3G29620_001 Musa acuminata GSMUA_Achr3G29620_001 I 0.508
LPERR09G10110 Leersia perrieri LPERR09G10110 I 0.508
TRIUR3_33098 Triticum urartu TRIUR3_33098 I 0.508
Bostr.25570s0008 Boechera stricta Bostr.25570s0008 I 0.508
Ciclev10021862m.g Citrus clementina Ciclev10021862m.g I 0.508
Gorai.010G155200 Gossypium raimondii Gorai.010G155200 I 0.508
MDP0000148548 Malus domestica MDP0000148548 I 0.508
orange1.1g024229m.g Citrus sinensis orange1.1g024229m.g I 0.508