CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g200125
(
Nematostella vectensis
)
E2F
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02319 (E2F_TDP)
IPR003316
NEMVEDRAFT_v1g200125
T173289_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSACAG00000013716
M01960_2.00
Anolis carolinensis
HNVGCGCBND
HNVGCGCBND
PBM
Weirauch et al.(2014)
pTH9221
0.450
0.450
E2F2
M01961_2.00
Homo sapiens
DNSGCGCSNH
DNSGCGCSNH
PBM
Weirauch et al.(2014)
pTH9195
0.450
0.450
E2f2
M00154_2.00
Mus musculus
NDNNGCGSBN
NVSCGCNNHN
PBM
Badis et al.(2009)
E2F2_1022
0.450
0.450
E2F2
M02949_2.00
Homo sapiens
AAAAATGGCGCCAAAAWD
HWTTTTGGCGCCATTTTT
SELEX
Jolma et al.(2013)
E2F2_1
0.450
0.450
E2F2
M02950_2.00
Homo sapiens
VDTTTTGGCGCCAAAAHN
NDTTTTGGCGCCAAAAHB
SELEX
Jolma et al.(2013)
E2F2_2
0.450
0.450
E2F2
M02951_2.00
Homo sapiens
AAAWWGGCGCCAWTTT
AAAWTGGCGCCWWTTT
SELEX
Jolma et al.(2013)
E2F2_3
0.450
0.450
E2F2
M04696_2.00
Homo sapiens
GCGCGCGCSYW
WRSGCGCGCGC
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1
0.450
0.450
E2F2
M04697_2.00
Homo sapiens
NDWWDGGCGCCWWHWN
NWDWWGGCGCCHWWHN
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2
0.450
0.450
E2F2
M09029_2.00
Homo sapiens
GGCGCGMAWC
GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B
0.450
0.450
E2f2
M09039_2.00
Mus musculus
GGCGCGMAWC
GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B
0.450
0.450
E2F2
M04698_2.00
Homo sapiens
SGBGSGCGCGS
SCGCGCSCVCS
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1
0.450
0.450
E2F2
M04699_2.00
Homo sapiens
DWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWH
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2
0.450
0.450
ENSOANG00000014967
M01962_2.00
Ornithorhynchus anatinus
NDSGCGCSHN
NDSGCGCSHN
PBM
Weirauch et al.(2014)
pTH9382
0.433
0.433
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.433
0.433
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00
Ostreococcus tauri
HRVGCGCCNN
NNGGCGCBYD
PBM
Weirauch et al.(2014)
pTH5701
0.433
0.433
E2F1
M02952_2.00
Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW
SELEX
Jolma et al.(2013)
E2F1_1
0.433
0.433
E2F1
M02953_2.00
Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW
SELEX
Jolma et al.(2013)
E2F1_2
0.433
0.433
E2F1
M02954_2.00
Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW
SELEX
Jolma et al.(2013)
E2F1_3
0.433
0.433
E2F1
M02955_2.00
Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT
SELEX
Jolma et al.(2013)
E2F1_4
0.433
0.433
E2F1
M04700_2.00
Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN
SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX
0.433
0.433
E2F1
M07938_2.00
Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD
0.433
0.433
E2F1
M09030_2.00
Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN
Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A
0.433
0.433
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.433
0.433
E2F1
M09521_2.00
Homo sapiens
NNGGCGGGAA
TTCCCGCCNN
Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478
0.433
0.433
E2F1
M10444_2.00
Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA
Transfac
Matys et al.(2006)
V$E2F_01
0.433
0.433
E2F1
M10445_2.00
Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV
Transfac
Matys et al.(2006)
V$E2F_03
0.433
0.433
E2F1
M10446_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_01
0.433
0.433
E2F1
M10447_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_02
0.433
0.433
E2F1
M10448_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3_01
0.433
0.433
E2F1
M10449_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3
0.433
0.433
E2F1
M10450_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_01
0.433
0.433
E2F1
M10451_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_02
0.433
0.433
E2F1
M10452_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4
0.433
0.433
E2F1
M10453_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6
0.433
0.433
For this family, TFs with SR scores >
0.429
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO46727
E2F
19
79
SEASLGLISSKFLALLKDSECGVEINEAASKLGVKRRRVYDVVNILRGAGLIRPKRQTQPF
Links
Other
E2F
family TFs
Other
Nematostella vectensis
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DI09_107p20
Microsporidia sp
DI09_107p20
I
0.462
GSMUA_Achr6G07100_001
Musa acuminata
GSMUA_Achr6G07100_001
I
0.450
ENSFALG00000010803
Ficedula albicollis
ENSFALG00000010803
I
0.450
Aquca_072_00025
Aquilegia coerulea
Aquca_072_00025
I
0.450
ML14475a
Mnemiopsis leidyi
ML14475a
I
0.450
HPBE_0002272401
Heligmosomoides bakeri
HPBE_0002272401
I
0.450
NERG_02347
Nematocida sp
NERG_02347
I
0.446
DME_0000040101
Dracunculus medinensis
DME_0000040101
I
0.446
nRc.2.0.1.g30898
Romanomermis culicivorax
nRc.2.0.1.g30898
I
0.446
ENSFALG00000006710
Ficedula albicollis
ENSFALG00000006710
I
0.446
E2F3
Macaca mulatta
ENSMMUG00000017649
I
0.444
ISCW005631
Ixodes scapularis
ISCW005631
I
0.435
POPTR_0004s21100
Populus trichocarpa
POPTR_0004s21100
I
0.433
Pvit_05435
Pogona vitticeps
Pvit_05435
I
0.433
Pavir.J38646
Panicum virgatum
Pavir.J38646
I
0.433
maker-piw_contig_136-snap-gene-0.25
Pythium iwayamai
maker-piw_contig_136-snap-gene-0.25
I
0.433
MTR_4g052000
Medicago truncatula
MTR_4g052000
I
0.433
gw.680.60.1
Branchiostoma floridae
gw.680.60.1
I
0.433
SapurV1A.0125s0090
Salix purpurea
SapurV1A.0125s0090
I
0.433
ENSPSIG00000015377
Pelodiscus sinensis
ENSPSIG00000015377
I
0.433
E2F1
Erinaceus europaeus
ENSEEUG00000009987
I
0.433
ENSSHAG00000007275
Sarcophilus harrisii
ENSSHAG00000007275
I
0.433
EFV59050
Trichinella spiralis
EFV59050
I
0.433
e2f5
Takifugu rubripes
ENSTRUG00000002354
I
0.433
DILT_0000042001
Diphyllobothrium latum
DILT_0000042001
I
0.433
D917_10139
Trichinella nativa
D917_10139
I
0.433
TRIUR3_33184
Triticum urartu
TRIUR3_33184
I
0.431
Traes_5DL_26C867084
Triticum aestivum
Traes_5DL_26C867084
I
0.431
Aan_R005837
Calypte anna
Aan_R005837
I
0.431
Traes_5BL_9F73E599F
Triticum aestivum
Traes_5BL_9F73E599F
I
0.431
Ocbimv22032616m.g
Octopus bimaculoides
Ocbimv22032616m.g
I
0.431
Pavir.J28624
Panicum virgatum
Pavir.J28624
I
0.431
Pavir.Ca00172
Panicum virgatum
Pavir.Ca00172
I
0.431
Traes_5AL_7FFD17EDE
Triticum aestivum
Traes_5AL_7FFD17EDE
I
0.431
Gfo_R015254
Geospiza fortis
Gfo_R015254
I
0.431
OMERI12G01820
Oryza meridionalis
OMERI12G01820
I
0.431
MLOC_11415
Hordeum vulgare
MLOC_11415
I
0.431
OB12G13530
Oryza brachyantha
OB12G13530
I
0.431
OBART12G03570
Oryza barthii
OBART12G03570
I
0.431
LPERR12G03370
Leersia perrieri
LPERR12G03370
I
0.431
GRMZM2G052515
Zea mays
GRMZM2G052515
I
0.431
BGIOSGA036595
Oryza indica
BGIOSGA036595
I
0.431
BRADI4G42050
Brachypodium distachyon
BRADI4G42050
I
0.431
F775_13418
Aegilops tauschii
F775_13418
I
0.431
Si010044m.g
Setaria italica
Si010044m.g
I
0.431
OGLUM12G04270
Oryza glumaepatula
OGLUM12G04270
I
0.431
ORGLA12G0034600
Oryza glaberrima
ORGLA12G0034600
I
0.431
ORUFI12G04170
Oryza rufipogon
ORUFI12G04170
I
0.431
Sb08g003670
Sorghum bicolor
Sb08g003670
I
0.431
OLONG_000194
Oryza longistaminata
OLONG_000194
I
0.431
OPUNC12G03430
Oryza punctata
OPUNC12G03430
I
0.431
AAEL012817
Aedes aegypti
AAEL012817
I
0.431
ONIVA12G03230
Oryza nivara
ONIVA12G03230
I
0.431
OS12G0158800
Oryza sativa
OS12G0158800
I
0.431
ASIM_0000970501
Anisakis simplex
ASIM_0000970501
I
0.429
E2F3
Tursiops truncatus
ENSTTRG00000009038
I
0.429