MDP0000248838 (Malus domestica)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 MDP0000248838 T173976_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.591 0.591
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.591 0.591
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.591 0.591
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.470 0.470
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.470 0.470
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.470 0.470
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.470 0.470
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000248838 E2F 32 110
MDP0000248838 E2F 196 260

Links

Other E2F family TFs
Other Malus domestica TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm024664 Prunus mume Pm024664 I 0.676
PRUPE_ppa015063mg Prunus persica PRUPE_ppa015063mg I 0.669
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.667
MDP0000734535 Malus domestica MDP0000734535 I 0.662
PK00080.1 Cannabis sativa PK00080.1 I 0.647
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.646
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.640
GLYMA05G01760 Glycine max GLYMA05G01760 I 0.625
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.621
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.621
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.621
GLYMA04G34870 Glycine max GLYMA04G34870 I 0.619
Ca_15301 Cicer arietinum Ca_15301 I 0.618
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.618
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.618
DEL1 Vitis vinifera VIT_17s0000g07630 I 0.610
OBART02G31930 Oryza barthii OBART02G31930 I 0.608
Bra018080 Brassica rapa Bra018080 I 0.603
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.603
Thhalv10010430m.g Eutrema salsugineum Thhalv10010430m.g I 0.603
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.598
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.598
Bo8g076700 Brassica oleracea Bo8g076700 I 0.596
DEL1 Arabidopsis lyrata fgenesh2_kg.5__1169__AT3G48160.2 I 0.596
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.596
TCM_011971 Theobroma cacao TCM_011971 I 0.596
orange1.1g018790m.g Citrus sinensis orange1.1g018790m.g I 0.590
Bo1g074680 Brassica oleracea Bo1g074680 I 0.588
Bra033767 Brassica rapa Bra033767 I 0.588
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.588
evm.TU.supercontig_35.34 Carica papaya evm.TU.supercontig_35.34 I 0.588
gene09494-v1.0-hybrid Fragaria vesca gene09494-v1.0-hybrid I 0.585
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.576
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.576
E2FE Arabidopsis thaliana AT3G48160 D 0.574
OB02G38920 Oryza brachyantha OB02G38920 I 0.574
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.574
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.574
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.574
Eucgr.K02883 Eucalyptus grandis Eucgr.K02883 I 0.574
Cla019450 Citrullus lanatus Cla019450 I 0.571
Cla008447 Citrullus lanatus Cla008447 I 0.569
TCM_017926 Theobroma cacao TCM_017926 I 0.568
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.566
30147.m014015 Ricinus communis 30147.m014015 I 0.566
cassava23001.valid.m1 Manihot esculenta cassava23001.valid.m1 I 0.566
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.566
SapurV1A.1521s0010 Salix purpurea SapurV1A.1521s0010 I 0.566
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.559
F775_06335 Aegilops tauschii F775_06335 I 0.559
F775_15908 Aegilops tauschii F775_15908 I 0.559
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.559
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.559
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.559
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.559
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.559
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.559
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.559
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.559
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.559
OS02G0739700 Oryza sativa OS02G0739700 I 0.559
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.559
Si006412m.g Setaria italica Si006412m.g I 0.559
Traes_7BS_CCA195724 Triticum aestivum Traes_7BS_CCA195724 I 0.559
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.559
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.559
chr1.CM1956.640.nc Lotus japonicus chr1.CM1956.640.nc I 0.559
OBART06G09260 Oryza barthii OBART06G09260 I 0.553
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.551
OGLUM06G09840 Oryza glumaepatula OGLUM06G09840 I 0.551
ONIVA06G10700 Oryza nivara ONIVA06G10700 I 0.551
OPUNC06G08860 Oryza punctata OPUNC06G08860 I 0.551
ORGLA06G0087600 Oryza glaberrima ORGLA06G0087600 I 0.551
ORUFI06G09470 Oryza rufipogon ORUFI06G09470 I 0.551
OS06G0245900 Oryza sativa OS06G0245900 I 0.551
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.551
VIT_14s0066g02370 Vitis vinifera VIT_14s0066g02370 I 0.551
29822.m003421 Ricinus communis 29822.m003421 I 0.551
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.551
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.551
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.544
Si019635m.g Setaria italica Si019635m.g I 0.544
Pavir.Db01700 Panicum virgatum Pavir.Db01700 I 0.544
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.537
GSMUA_Achr7G02220_001 Musa acuminata GSMUA_Achr7G02220_001 I 0.537
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.537
mgf007657m Mimulus guttatus mgf007657m I 0.537
Bo2g012280 Brassica oleracea Bo2g012280 I 0.529
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.529
Lus10039455.g Linum usitatissimum Lus10039455.g I 0.527
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.523
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.523
E2FF Arabidopsis thaliana AT3G01330 I 0.522
Bra023497 Brassica rapa Bra023497 I 0.522
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.522
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.522
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.522
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.519
Bostr.1460s0076 Boechera stricta Bostr.1460s0076 I 0.515
OLONG_012839 Oryza longistaminata OLONG_012839 I 0.512
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.512
Traes_6DL_90C72AE92 Triticum aestivum Traes_6DL_90C72AE92 I 0.511
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.508
mgf016204m Mimulus guttatus mgf016204m I 0.507
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.507
BGIOSGA022619 Oryza indica BGIOSGA022619 I 0.504
TRIUR3_19744 Triticum urartu TRIUR3_19744 I 0.493
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.485
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.485
DEL2 Arabidopsis lyrata Al_scaffold_0006_1397 I 0.478
Bo5g155250 Brassica oleracea Bo5g155250 I 0.478
Bra039127 Brassica rapa Bra039127 I 0.478
BRADI3G59740 Brachypodium distachyon BRADI3G59740 I 0.474
E2F8 Tupaia belangeri ENSTBEG00000005521 I 0.471
E2FD Arabidopsis thaliana AT5G14960 D 0.470
ENSPFOG00000005584 Poecilia formosa ENSPFOG00000005584 I 0.470
fgenesh1_pg.scaffold_121000063 Physcomitrella patens fgenesh1_pg.scaffold_121000063 I 0.466
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.463
fgenesh2_pg.scaffold_132000019 Physcomitrella patens fgenesh2_pg.scaffold_132000019 I 0.463
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.456
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.456
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I 0.456
Aquca_002_00349 Aquilegia coerulea Aquca_002_00349 I 0.456
E2F7 Microcebus murinus ENSMICG00000013872 I 0.455
E2F8 Vicugna pacos ENSVPAG00000012423 I 0.442
CMT433C Cyanidioschyzon merolae CMT433C I 0.439
EuGene.0000050713 Micromonas pusilla EuGene.0000050713 I 0.434
fgenesh2_pg.scaffold_288000044 Branchiostoma floridae fgenesh2_pg.scaffold_288000044 I 0.434
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I 0.434
PITG_06416 Phytophthora infestans PITG_06416 I 0.432
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.432