CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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foxa1.L
(
Xenopus laevis
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
XB-GENE-487356
T189692_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA
TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.422
1.000
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.422
1.000
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.422
1.000
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.422
1.000
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.422
1.000
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.422
1.000
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.422
1.000
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA
TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.078
1.000
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.422
1.000
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA
TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.422
1.000
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.422
1.000
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW
WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.422
1.000
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.422
1.000
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA
TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.422
1.000
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA
TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.422
1.000
FOXA1
M10542_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.078
1.000
FOXA1
M10543_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.422
1.000
FOXA1
M10544_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.422
1.000
FOXA1
M10545_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.422
1.000
FOXA1
M10546_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.422
1.000
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.422
1.000
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.422
1.000
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.422
1.000
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAA85028
Forkhead
1
31
QAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQ
AAI28690
Forkhead
159
200
KPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQ
Links
Other
Forkhead
family TFs
Other
Xenopus laevis
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
FOXA1
Pteropus vampyrus
ENSPVAG00000014588
I
0.422
Foxa1
Rattus norvegicus
ENSRNOG00000009284
I
0.422
FOXA1
Sorex araneus
ENSSARG00000008208
I
0.422
ENSSHAG00000001593
Sarcophilus harrisii
ENSSHAG00000001593
I
0.422
FOXA1
Pan troglodytes
ENSPTRG00000006285
I
0.422
ENSPSIG00000011490
Pelodiscus sinensis
ENSPSIG00000011490
I
0.422
FOXA1
Otolemur garnettii
ENSOGAG00000031319
I
0.422
ENSPANG00000015153
Papio anubis
ENSPANG00000015153
I
0.422
ENSPPYG00000005758
Pongo abelii
ENSPPYG00000005758
I
0.422
ENSSSCG00000001940
Sus scrofa
ENSSSCG00000001940
I
0.422
ENSSTOG00000023537
Ictidomys tridecemlineatus
ENSSTOG00000023537
I
0.422
Gfo_R012942
Geospiza fortis
Gfo_R012942
I
0.422
Ogr19511
Ophisaurus gracilis
Ogr19511
I
0.422
foxa1.S
Xenopus laevis
XB-GENE-6256649
I
0.422
ENSP00000315955-D2
Bos grunniens
ENSP00000315955-D2
I
0.422
Cmyd_10014568
Chelonia mydas
Cmyd_10014568
I
0.422
FOXA1
Tursiops truncatus
ENSTTRG00000002855
I
0.422
ENSVPAG00000009933
Vicugna pacos
ENSVPAG00000009933
I
0.422
Aan_R005715
Calypte anna
Aan_R005715
I
0.422
ENSOARG00000008192
Ovis aries
ENSOARG00000008192
I
0.422
Foxa1
Mus musculus
ENSMUSG00000035451
D
0.422
FOXA1
Dasypus novemcinctus
ENSDNOG00000032245
I
0.422
ENSFALG00000006161
Ficedula albicollis
ENSFALG00000006161
I
0.422
FOXA1
Felis catus
ENSFCAG00000028305
I
0.422
ENSCSAG00000015444
Chlorocebus sabaeus
ENSCSAG00000015444
I
0.422
ENSCPOG00000026606
Cavia porcellus
ENSCPOG00000026606
I
0.422
ENSAMEG00000008009
Ailuropoda melanoleuca
ENSAMEG00000008009
I
0.422
FOXA1
Bos taurus
ENSBTAG00000013888
I
0.422
FOXA1
Canis familiaris
ENSCAFG00000013743
I
0.422
FOXA1
Homo sapiens
ENSG00000129514
D
0.422
FOXA1
Gorilla gorilla
ENSGGOG00000022617
I
0.422
FOXA1
Myotis lucifugus
ENSMLUG00000029779
I
0.422
FOXA1
Macaca mulatta
ENSMMUG00000009653
I
0.422
ENSMODG00000012030
Monodelphis domestica
ENSMODG00000012030
I
0.422
ENSMPUG00000016255
Mustela putorius furo
ENSMPUG00000016255
I
0.422
ENSMICG00000003135
Microcebus murinus
ENSMICG00000003135
I
0.422
ENSMEUG00000000643
Macropus eugenii
ENSMEUG00000000643
I
0.422
FOXA1
Anolis carolinensis
ENSACAG00000001256
I
0.422
ENSLACG00000012599
Latimeria chalumnae
ENSLACG00000012599
I
0.422
FOXA1
Loxodonta africana
ENSLAFG00000000062
I
0.422
FOXA3
Homo sapiens
ENSG00000170608
D
0.030