Bo1g147740 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo1g147740 T191877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.855 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.855 0.889
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.824 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g147740.1 GATA 43 78

Links

Other GATA family TFs
Other Brassica oleracea TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra040288 Brassica rapa Bra040288 I 0.867
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.855
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.855
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.855
GATA15 Arabidopsis thaliana AT3G06740 D 0.855
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.855
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.855
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.824
Bra037421 Brassica rapa Bra037421 I 0.824
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.824
GATA16 Arabidopsis thaliana AT5G49300 D 0.824
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.824
Bo7g092660 Brassica oleracea Bo7g092660 I 0.824
Bo00847s050 Brassica oleracea Bo00847s050 I 0.824
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.824
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.812
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.812
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.812
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.812
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.812
Ca_02992 Cicer arietinum Ca_02992 I 0.812
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.812
TCM_021303 Theobroma cacao TCM_021303 I 0.810
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.810
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.810
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.810
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.810
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.810
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.810
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I 0.810
Pm008287 Prunus mume Pm008287 I 0.810
Cla022104 Citrullus lanatus Cla022104 I 0.810
mgf003937m Mimulus guttatus mgf003937m I 0.810
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.810
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.810
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.810
29889.m003248 Ricinus communis 29889.m003248 I 0.807
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.807
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.807
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.807
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.807
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.807
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.807
TCM_004753 Theobroma cacao TCM_004753 I 0.807
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.806
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.806
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.806
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.806
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.806
PK18820.1 Cannabis sativa PK18820.1 I 0.806
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.806
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.806
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.806
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.806
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.806
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.806
Cla009422 Citrullus lanatus Cla009422 I 0.806
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.806
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.806
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.806
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.806
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.806
OBART03G39750 Oryza barthii OBART03G39750 I 0.806
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.806
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.806
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.806
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.806
F775_43556 Aegilops tauschii F775_43556 I 0.806
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.806
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.806
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.806
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.806
TCM_026732 Theobroma cacao TCM_026732 I 0.806
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.806
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.806
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.806
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.806
Si037892m.g Setaria italica Si037892m.g I 0.806
OS03G0831200 Oryza sativa OS03G0831200 I 0.806
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.806
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.806
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.806
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.806