elt-3 (Caenorhabditis elegans)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 WBGene00001251 T195703_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in determination of adult lifespan and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including Caaaaa; Caaaap; hermaphrodite distal tip cell; hypodermis; and rectum. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
elt-3
M08128_2.00		 Caenorhabditis elegans
TGATAAVA
TBTTATCA		 ChIP-seq
Mathelier et al.(2014)
MA0542.1		 (Direct) (Direct)
elt-3
M09557_2.00		 Caenorhabditis elegans
DDTGATAASA
TSTTATCAHH		 Misc
Heinz et al.(2010)
cElegans-L1-ELT3_modEncode		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG07341
M01230_2.00 		Caenorhabditis briggsae
HGATANNN
NNNTATCD		 PBM
Lambert et al.(2019)
pTH11455 		0.867 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
K02B9.4a GATA 153 187
K02B9.4b GATA 244 278
K02B9.4c GATA 135 169
K02B9.4d GATA 96 130

Links

Other GATA family TFs
Other Caenorhabditis elegans TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG07341 Caenorhabditis briggsae CBG07341 D 0.867
CRE22330 Caenorhabditis remanei CRE22330 I 0.867
CBN16869 Caenorhabditis brenneri CBN16869 I 0.867
PPA05888 Pristionchus pacificus PPA05888 I 0.865
CJA17630 Caenorhabditis japonica CJA17630 I 0.865
Hba_00399 Heterorhabditis bacteriophora Hba_00399 I 0.856
scaffold1020-EXSNAP2012.4 Pristionchus exspectatus scaffold1020-EXSNAP2012.4 I 0.855
Ppa-elt-3 Pristionchus pacificus PPA00209 I 0.855
scaffold161-EXSNAP2012.12 Pristionchus exspectatus scaffold161-EXSNAP2012.12 I 0.855
BXY_0111400 Bursaphelenchus xylophilus BXY_0111400 I 0.851
HCOI00225500 Haemonchus contortus HCOI00225500 I 0.850
HCOI01260600 Haemonchus contortus HCOI01260600 I 0.850
OESDEN_22429 Oesophagostomum dentatum OESDEN_22429 I 0.825
OESDEN_01952 Oesophagostomum dentatum OESDEN_01952 I 0.825
ACOC_0000090001 Angiostrongylus costaricensis ACOC_0000090001 I 0.825
ACAC_0000964201 Angiostrongylus cantonensis ACAC_0000964201 I 0.825
TELCIR_03216 Teladorsagia circumcincta TELCIR_03216 I 0.825
NBR_0002046501 Nippostrongylus brasiliensis NBR_0002046501 I 0.825
HPBE_0001898401 Heligmosomoides bakeri HPBE_0001898401 I 0.825
ANCCAN_11157 Ancylostoma caninum ANCCAN_11157 I 0.825
HCOI00096800 Haemonchus contortus HCOI00096800 I 0.825
ANCDUO_15230 Ancylostoma duodenale ANCDUO_15230 I 0.825
ANCDUO_24750 Ancylostoma duodenale ANCDUO_24750 I 0.825
DICVIV_08599 Dictyocaulus viviparus DICVIV_08599 I 0.825