CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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elt-7
(
Caenorhabditis elegans
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
WBGene00015981
T195711_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
elt-7
M00670_2.00
Caenorhabditis elegans
NMTGATAASNNN
NNNSTTATCAKN
PBM
Narasimhan et al.(2015)
pTH9877
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.802
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00670_2.00
GATA
51
85
CSHCSTTTTTLWRKNDEGNLECNACNLYYRHNKVK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C18G1.2a
GATA
143
177
CSHCSTTTTTLWRKNDEGNLECNACNLYYRHNKVK
C18G1.2b
GATA
61
95
CSHCSTTTTTLWRKNDEGNLECNACNLYYRHNKVK
Links
Other
GATA
family TFs
Other
Caenorhabditis elegans
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE18587
Caenorhabditis remanei
CRE18587
I
0.807