fgenesh4_pg.C_scaffold_83000006 (Volvox carteri)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 fgenesh4_pg.C_scaffold_83000006 T196228_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
0300010106
M02018_2.00 		Ostreococcus tauri
NNNKATCN
NGATMNNN		 PBM
Weirauch et al.(2014)
pTH7890 		0.838 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh4_pg.C_scaffold_83000006 GATA 264 299

Links

Other GATA family TFs
Other Volvox carteri TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh4_pg.C_scaffold_83000014 Volvox carteri fgenesh4_pg.C_scaffold_83000014 I 0.867
CHLREDRAFT_187360 Chlamydomonas reinhardtii CHLREDRAFT_187360 I 0.853
OSTLU_30438 Ostreococcus lucimarinus OSTLU_30438 I 0.838
e_gw1.3.601.1 Ostreococcus RCC809 e_gw1.3.601.1 I 0.838
estExt_fgenesh1_pg.C_120215 Micromonas pusilla estExt_fgenesh1_pg.C_120215 I 0.838
estExt_fgenesh2_pg.C_Chr_040222 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_040222 I 0.838
0300010106 Ostreococcus tauri 0300010106 D 0.838