CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_401365.1
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
scaffold_401365.1
T201389_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_401365.1
GRAS
321
695
LRTMLVSCAQAVSINDRRTADDLLSQIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLASTANAKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGHRLAKYCQKFNVPFEYNAIAQKWETIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLDKELVQKLKLLVESGYKTKEFDVDQDCHWLLQGWKGRIVYGSSVWV
scaffold_401365.1
GRAS
940
1319
FRTLLTHCAQAISTGDKTTALDFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMIQNYYNAITTSLKDTAADTLKAYRVYLSSSPFVTLMYFFSIRMILEVAKDAPVLHIVDFGILYGFQWPMFIQYISGRNDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIGIEDLDIRPDEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHTVVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKPIKPELVELFREKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWV
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL14
Arabidopsis lyrata
Al_scaffold_0001_697
N
0.739