CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Solyc07g052960.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc07g052960.1
T201572_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc07g052960.1.1
GRAS
37
417
LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVYPNATNLHGSSNLERRLMSVTELAGYVDLIPWHRFGFCASNSVIYKAIERQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVPPLLNVSSEEVGQRLANFAKFRDVPFEFHVIEDLNYDMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGALSSRDIFLDRVKDLNPCIVTIVDEDCDLGNPTTLTSRIATCFNYLWIPFDALETFLPKDSKQRLDYEAEIGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEHASGWGMKKEEHDMLVLTWKGHNSVYATSWV
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400026191
Solanum tuberosum
PGSC0003DMG400026191
N
0.984
cassava21819.m1
Manihot esculenta
cassava21819.m1
N
0.758
30156.m001710
Ricinus communis
30156.m001710
N
0.742
orange1.1g041891m.g
Citrus sinensis
orange1.1g041891m.g
N
0.734
Ciclev10015222m.g
Citrus clementina
Ciclev10015222m.g
N
0.732
Gorai.013G072100
Gossypium raimondii
Gorai.013G072100
N
0.731
VIT_12s0059g02770
Vitis vinifera
VIT_12s0059g02770
N
0.729
TCM_007806
Theobroma cacao
TCM_007806
N
0.726
GLYMA13G38080
Glycine max
GLYMA13G38080
N
0.712
PRUPE_ppa016112mg
Prunus persica
PRUPE_ppa016112mg
N
0.709
GLYMA12G32350
Glycine max
GLYMA12G32350
N
0.707
Pm015255
Prunus mume
Pm015255
N
0.707
MDP0000863616
Malus domestica
MDP0000863616
N
0.707
SapurV1A.0187s0300
Salix purpurea
SapurV1A.0187s0300
N
0.701