CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10039709.g
(
Linum usitatissimum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Lus10039709.g
T202783_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10039709
GRAS
55
465
IEKLLLHCASALEGKEWTLAQQVMWVLNNVASLSGDPNQRLTSWFLRALILRAAKVCPTAMHHFDSGGGGGGGGSSSASYGSRRRKMTVTELAGYVDLIPWHTFGFCASNGAVLKAIQGCSKVHVLDFSVTHCVQWPTLIDALAKRPEGPPSLRLTVPSIRPSVPPLLNVSCEEVGLRLSNFAKFRDVEFEFNIINGSFDPLASCIKSSSDYFHHYFESLLTSLTDPGQLSSLLREDEVIVVNCQNWLRYLSDDESSAIGSLRDEFLRTILTLNPAIVVVVDEDADLNISSLTTRITNCFNYLWIPFDALETFLPKDSSQRNEYESDIGHKIENVISHEGAQRMERLESGAKLCQRMKNVGFSSITFYEDTIKEVKSLLDEHASGWGMKKEEDMLVLTWKGHNSVFATTWV
Links
Other
GRAS
family TFs
Other
Linum usitatissimum
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10018498.g
Linum usitatissimum
Lus10018498.g
N
0.927
orange1.1g041891m.g
Citrus sinensis
orange1.1g041891m.g
N
0.743
Ciclev10015222m.g
Citrus clementina
Ciclev10015222m.g
N
0.743
cassava21819.m1
Manihot esculenta
cassava21819.m1
N
0.742
VIT_12s0059g02770
Vitis vinifera
VIT_12s0059g02770
N
0.734
MDP0000863616
Malus domestica
MDP0000863616
N
0.731
Gorai.013G072100
Gossypium raimondii
Gorai.013G072100
N
0.728
30156.m001710
Ricinus communis
30156.m001710
N
0.728
POPTR_0017s06900
Populus trichocarpa
POPTR_0017s06900
N
0.727
TCM_007806
Theobroma cacao
TCM_007806
N
0.726
SapurV1A.0312s0260
Salix purpurea
SapurV1A.0312s0260
N
0.724
POPTR_0007s02880
Populus trichocarpa
POPTR_0007s02880
N
0.724
PRUPE_ppa016112mg
Prunus persica
PRUPE_ppa016112mg
N
0.722
Pm015255
Prunus mume
Pm015255
N
0.715
evm.TU.supercontig_8.255
Carica papaya
evm.TU.supercontig_8.255
N
0.712
SapurV1A.0187s0300
Salix purpurea
SapurV1A.0187s0300
N
0.706