CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib03902
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Ib03902
T203035_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib03902.1.p
GRAS
306
674
LRTLLIHCAQAVSVNNHTLASDILSIIRQHASTSGDDSQRLAFCLADCLEVRLAGTGSQLYRKMMAKRRKAVDILKVFHLCIAISPFLRVPYYFSNKTIIDVSKGKPRVHIIDFGICFGFQWPSLFEQHAKREGGPPMVRITGIEQPQPGFRPNESSKNTGPRLADYASMFNIPFEYQGISSKWETIKIDDFKIEKDDVVIVNCIYCLKNLGDETVSINSARNRVLNTIRMLKPKVFIHGVVNGSYITPFFLTRFKKVMYHHSALFDVIDKTLPRDAEARMILERDIYRSTVLNVIACEGSERIERPESYKKWKLRNKKAGFEQLQLNPDTVEGTRAMVKQYHKDFVINEDDQWLLLGWKGRILYGMAT
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ia01446
Panicum virgatum
Pavir.Ia01446
N
0.913
Si039877m.g
Setaria italica
Si039877m.g
N
0.883
Si040221m.g
Setaria italica
Si040221m.g
N
0.749
Pavir.Ib03899
Panicum virgatum
Pavir.Ib03899
N
0.749
Pavir.Ia01445
Panicum virgatum
Pavir.Ia01445
N
0.741
Sb01g015165
Sorghum bicolor
Sb01g015165
N
0.733
Sb01g015170
Sorghum bicolor
Sb01g015170
N
0.730
Sb01g015180
Sorghum bicolor
Sb01g015180
N
0.730
GRMZM2G335814
Zea mays
GRMZM2G335814
N
0.728
OLONG_014794
Oryza longistaminata
OLONG_014794
N
0.708
BGIOSGA013074
Oryza indica
BGIOSGA013074
N
0.700
ORUFI03G25830
Oryza rufipogon
ORUFI03G25830
N
0.700