CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J13190
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J13190
T203054_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J13190.1.p
GRAS
356
726
LRTLLIHCAQAVAADDRQLATELIKKIRQHSSPDGDCTQRLAFYLVDGLEARLAGVGSQLYRKLLAKRVPDEEVFKIYKFSLAAFLLHRASYAFANRTIIEASRGRLKVHIIDFGICFGFQWPSLIQQFAEQGVPPMLRITGIDVTRPGFGTLEITEQAGKRLADYANMFKVPFQYQGISSRFENVQLEDLNIEEDELVIVNCLYRMKSLGDETVSMNSARDRVLKLMRRINPKVLVLGVVNGSYSSPFFITRFKELLFHYSSVFDMFDANAPRDNEARKLLEGRVLAREAINIIACEGAERSERPETFKQWQARCLKAGFEQLPIDPAILNSILEMKKAIYHEDFFADEDSGWLLQGWKGRVMHAISKWK
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ca00617
Panicum virgatum
Pavir.Ca00617
N
0.919
Si024218m.g
Setaria italica
Si024218m.g
N
0.846
GRMZM2G089662
Zea mays
GRMZM2G089662
N
0.743
Sb09g001160
Sorghum bicolor
Sb09g001160
N
0.740
Sb09g001150
Sorghum bicolor
Sb09g001150
N
0.729
BGIOSGA018950
Oryza indica
BGIOSGA018950
N
0.727
OLONG_003059
Oryza longistaminata
OLONG_003059
N
0.724