CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J22770
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J22770
T203071_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J22770.1.p
GRAS
33
411
LRGLVLACAGLLHRGDVDGARRAAAEVLSTADPRGDAADRLAHHFARALARRVDGDRAGGEDVAAPSGGAASSSAPGAPSATAYLAYNQIAPFLRFAHLTANQAILDAAASGGARRLHIVDLDAAHGVQWPPLLQAIADRADPDLGPPEVRITGAGPDRDVLLRTGDRLRAFAGSLNLPFRFHPLLLPCTTQLAADPVTELELHPDETLAVNCVLFLHKLGSDGEIAAFLNWVKSMNPSVVTLAEREAGIGSNCPAEDLHRGVAAAMDYYSAVFDALEATAPPGSADRLAVEQEVLGQEIDAVVAPGHAGRRARGFDSWATAARAAGLSPRPLSAFAVSQARLLLRLHYPSEGYVAEEARGACFLGWQTRPLMSVSSWQ
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J25515
Panicum virgatum
Pavir.J25515
N
0.884
GRMZM2G143433
Zea mays
GRMZM2G143433
N
0.802
ORUFI02G07490
Oryza rufipogon
ORUFI02G07490
N
0.789
ORGLA02G0069300
Oryza glaberrima
ORGLA02G0069300
N
0.755
ONIVA01G45020
Oryza nivara
ONIVA01G45020
N
0.749
OS02G0197300
Oryza sativa
OS02G0197300
N
0.749
BGIOSGA006948
Oryza indica
BGIOSGA006948
N
0.744
OMERI02G08460
Oryza meridionalis
OMERI02G08460
N
0.733
OPUNC06G18940
Oryza punctata
OPUNC06G18940
N
0.716
BRADI3G07160
Brachypodium distachyon
BRADI3G07160
N
0.711