DAPPUDRAFT_27769 (Daphnia pulex)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 DAPPUDRAFT_27769 T206380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.689 0.917
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.689 0.917
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.689 0.917
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.689 0.917
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.689 0.917
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.682 0.812
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.682 0.812
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.682 0.812
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.682 0.812
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.682 0.812
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.680 0.854
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.680 0.854
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.680 0.854
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.680 0.854
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX87593 Homeodomain 120 167

Links

Other Homeodomain family TFs
Other Daphnia pulex TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAG42360 Xenopus laevis AAG42360 I 0.838
AAG42361 Xenopus laevis AAG42361 N 0.763
ENSPMAG00000010180 Petromyzon marinus ENSPMAG00000010180 N 0.735
six1.L Xenopus laevis XB-GENE-480721 I 0.730
ENSPMAG00000009968 Petromyzon marinus ENSPMAG00000009968 I 0.730
six2.S Xenopus laevis XB-GENE-865135 I 0.730
Ocbimv22032757m.g Octopus bimaculoides Ocbimv22032757m.g I 0.693
CapteG227938 Capitella teleta CapteG227938 I 0.693
LotgiG115798 Lottia gigantea LotgiG115798 I 0.693
HelroG143898 Helobdella robusta HelroG143898 I 0.692
AALB010817 Anopheles albimanus AALB010817 I 0.689
MCINX003783 Melitaea cinxia MCINX003783 I 0.689
ADIR002306 Anopheles dirus ADIR002306 I 0.689
KGM_20665 Danaus plexippus KGM_20665 I 0.689
ACOM023033 Anopheles coluzzii ACOM023033 I 0.689
AATE008460 Anopheles atroparvus AATE008460 I 0.689
ACUA023926 Anopheles culicifacies ACUA023926 I 0.689
GE22732 Drosophila yakuba FBgn0239938 I 0.689
GD12161 Drosophila simulans FBgn0183898 I 0.689
GF24111 Drosophila ananassae FBgn0101105 I 0.689
GG13283 Drosophila erecta FBgn0105555 I 0.689
GA17741 Drosophila pseudoobscura FBgn0077751 I 0.689
Six4 Drosophila melanogaster FBgn0027364 D 0.689
CpipJ_CPIJ007957 Culex pipiens CpipJ_CPIJ007957 I 0.689
GH14784 Drosophila grimshawi FBgn0122260 I 0.689
GI11887 Drosophila mojavensis FBgn0134645 I 0.689
GJ13766 Drosophila virilis FBgn0200986 I 0.689
GK12359 Drosophila willistoni FBgn0214369 I 0.689
AEPI002096 Anopheles epiroticus AEPI002096 I 0.689
GM22186 Drosophila sechellia FBgn0177057 I 0.689
SMU15013596 Schmidtea mediterranea SMU15013596 I 0.689
GE22381 Drosophila yakuba FBgn0239604 I 0.689
AARA005499 Anopheles arabiensis AARA005499 I 0.689
AGAP011067 Anopheles gambiae AGAP011067 I 0.689
BGIBMGA000091 Bombyx mori BGIBMGA000091 I 0.689
SINV15566 Solenopsis invicta SINV15566 I 0.689
AMIN008523 Anopheles minimus AMIN008523 I 0.689
AFUN004151 Anopheles funestus AFUN004151 I 0.689
AMEC008377 Anopheles melas AMEC008377 I 0.689
AMEM005184 Anopheles merus AMEM005184 I 0.689
ASTEI05569 Anopheles stephensi ASTEI05569 I 0.689
Cflo_08297--XP_001120698.1_APIME Camponotus floridanus Cflo_08297--XP_001120698.1_APIME I 0.689
CPIJ007957 Culex quinquefasciatus CPIJ007957 I 0.689
CGI_10022945 Crassostrea gigas CGI_10022945 I 0.689
AQUA001156 Anopheles quadriannulatus AQUA001156 I 0.689
ASIS016521 Anopheles sinensis ASIS016521 I 0.689
ADAC000140 Anopheles darlingi ADAC000140 I 0.689
AGAP011065 Anopheles gambiae AGAP011065 I 0.689
Hsal_06384--XP_001120698.1_APIME Harpegnathos saltator Hsal_06384--XP_001120698.1_APIME I 0.689
AFAF011509 Anopheles farauti AFAF011509 I 0.689
ACEP26590 Atta cephalotes ACEP26590 I 0.689
MDOA003378 Musca domestica MDOA003378 I 0.689
AAEL010327 Aedes aegypti AAEL010327 I 0.689
NV11991 Nasonia vitripennis NV11991 I 0.688
SMAR005228 Strigamia maritima SMAR005228 I 0.683
six4a Tetraodon nigroviridis ENSTNIG00000017344 I 0.682
ENSPANG00000020970 Papio anubis ENSPANG00000020970 I 0.682
ENSONIG00000020117 Oreochromis niloticus ENSONIG00000020117 I 0.682
six4a Takifugu rubripes ENSTRUG00000010704 I 0.682
SIX4 Ochotona princeps ENSOPRG00000011678 I 0.682
ENSTSYG00000001908 Tarsius syrichta ENSTSYG00000001908 I 0.682
six4a Oryzias latipes ENSORLG00000015756 I 0.682
ENSPFOG00000004053 Poecilia formosa ENSPFOG00000004053 I 0.682
ENSSHAG00000016030 Sarcophilus harrisii ENSSHAG00000016030 I 0.682
SIX4 Pan troglodytes ENSPTRG00000006411 I 0.682
Six4 Rattus norvegicus ENSRNOG00000007250 I 0.682
ENSPPYG00000005875 Pongo abelii ENSPPYG00000005875 I 0.682
SIX4 Sus scrofa ENSSSCG00000005089 I 0.682
SIX4 Procavia capensis ENSPCAG00000014927 I 0.682
Afo_R010343 Aptenodytes forsteri Afo_R010343 I 0.682
ENSXMAG00000013480 Xiphophorus maculatus ENSXMAG00000013480 I 0.682
ENSSTOG00000029039 Ictidomys tridecemlineatus ENSSTOG00000029039 I 0.682
Aan_R001649 Calypte anna Aan_R001649 I 0.682
SIX4 Callithrix jacchus ENSCJAG00000019133 I 0.682
Ogr08726 Ophisaurus gracilis Ogr08726 I 0.682
SIX4 Gallus gallus ENSGALG00000017389 I 0.682
Pvit_17416 Pogona vitticeps Pvit_17416 I 0.682
SIX4 Canis familiaris ENSCAFG00000015627 I 0.682
SIX4 Homo sapiens ENSG00000100625 D 0.682
ENSFALG00000003446 Ficedula albicollis ENSFALG00000003446 I 0.682
SIX4 Dasypus novemcinctus ENSDNOG00000044446 I 0.682
ENSCSAG00000014171 Chlorocebus sabaeus ENSCSAG00000014171 I 0.682
ENSCPOG00000014392 Cavia porcellus ENSCPOG00000014392 I 0.682
SIX4 Equus caballus ENSECAG00000023515 I 0.682
Myotis_brandtii_SIX4_10027187 Myotis brandtii Myotis_brandtii_SIX4_10027187 I 0.682
SIX4 Otolemur garnettii ENSOGAG00000016082 I 0.682
ENSLACG00000018526 Latimeria chalumnae ENSLACG00000018526 I 0.682
SIX4 Monodelphis domestica ENSMODG00000008646 I 0.682
Cmyd_10008495 Chelonia mydas Cmyd_10008495 I 0.682
ENSAMEG00000002968 Ailuropoda melanoleuca ENSAMEG00000002968 I 0.682
Six4 Mus musculus ENSMUSG00000034460 D 0.682
ENSOARG00000021130 Ovis aries ENSOARG00000021130 I 0.682
six4a Danio rerio ENSDARG00000004695 I 0.682
SIX4 Loxodonta africana ENSLAFG00000021577 I 0.682
ENSMMUG00000001640 Macaca mulatta ENSMMUG00000001640 I 0.682
ENSMEUG00000015192 Macropus eugenii ENSMEUG00000015192 I 0.682
ENSLOCG00000010093 Lepisosteus oculatus ENSLOCG00000010093 I 0.682
SIX4 Microcebus murinus ENSMICG00000003524 I 0.682
SIX4 Meleagris gallopavo ENSMGAG00000013569 I 0.682
ENSAPLG00000008107 Anas platyrhynchos ENSAPLG00000008107 I 0.682
SIX5 Tursiops truncatus ENSTTRG00000014303 I 0.680
ENSBTAP00000017753-D1 Bos grunniens ENSBTAP00000017753-D1 I 0.680
Six5 Mus musculus ENSMUSG00000040841 I 0.680
ENSEEUG00000006684 Erinaceus europaeus ENSEEUG00000006684 I 0.680
SIX5 Equus caballus ENSECAG00000015419 I 0.680
SIX5 Felis catus ENSFCAG00000030970 I 0.680
SIX5 Homo sapiens ENSG00000177045 D 0.680
SIX5 Loxodonta africana ENSLAFG00000030935 I 0.680
SIX5 Gorilla gorilla ENSGGOG00000007958 I 0.680
SIX5 Dasypus novemcinctus ENSDNOG00000035763 I 0.680
ENSCSAG00000003151 Chlorocebus sabaeus ENSCSAG00000003151 I 0.680
SIX5 Bos taurus ENSBTAG00000013346 I 0.680
ENSAMEG00000000785 Ailuropoda melanoleuca ENSAMEG00000000785 I 0.680
SIX5 Canis familiaris ENSCAFG00000004394 I 0.680
SIX5 Callithrix jacchus ENSCJAG00000012372 I 0.680
SIX5 Cavia porcellus ENSCPOG00000014282 I 0.680
ENSMICG00000001845 Microcebus murinus ENSMICG00000001845 I 0.680
SIX5 Myotis lucifugus ENSMLUG00000001318 I 0.680
SIX5 Pan troglodytes ENSPTRG00000033681 I 0.680
ENSPPYG00000010131 Pongo abelii ENSPPYG00000010131 I 0.680
SIX5 Pteropus vampyrus ENSPVAG00000001347 I 0.680
Six5 Rattus norvegicus ENSRNOG00000060146 I 0.680
ENSSTOG00000028295 Ictidomys tridecemlineatus ENSSTOG00000028295 I 0.680
SIX5 Procavia capensis ENSPCAG00000004939 I 0.680
ENSPANG00000005316 Papio anubis ENSPANG00000005316 I 0.680
ENSMMUG00000016455 Macaca mulatta ENSMMUG00000016455 I 0.680
ENSMPUG00000005715 Mustela putorius furo ENSMPUG00000005715 I 0.680
SIX5 Otolemur garnettii ENSOGAG00000013460 I 0.680
ENSOANG00000013518 Ornithorhynchus anatinus ENSOANG00000013518 I 0.679
ENSAMXG00000015232 Astyanax mexicanus ENSAMXG00000015232 I 0.678
LDEC015106 Leptinotarsa decemlineata LDEC015106 I 0.677
BGLB013708 Biomphalaria glabrata BGLB013708 I 0.677
LDEC016907 Leptinotarsa decemlineata LDEC016907 I 0.677
six4 Xenopus tropicalis XB-GENE-481699 I 0.677
LCUP015129 Lucilia cuprina LCUP015129 I 0.677
ENSXMAG00000004315 Xiphophorus maculatus ENSXMAG00000004315 I 0.677
ENSLACG00000013126 Latimeria chalumnae ENSLACG00000013126 I 0.677
ENSONIG00000003682 Oreochromis niloticus ENSONIG00000003682 I 0.677
six5 Oryzias latipes ENSORLG00000006762 I 0.677
ENSGMOG00000010829 Gadus morhua ENSGMOG00000010829 I 0.677
six4a Gasterosteus aculeatus ENSGACG00000008440 I 0.677
ACYPI010082 Acyrthosiphon pisum ACYPI010082 I 0.677
ENSAMXG00000019352 Astyanax mexicanus ENSAMXG00000019352 I 0.677
six5 Danio rerio ENSDARG00000068406 I 0.677
ENSPFOG00000009796 Poecilia formosa ENSPFOG00000009796 I 0.677
six4b Danio rerio ENSDARG00000031983 I 0.677
TC003852 Tribolium castaneum TC003852 I 0.677
RPRC000264 Rhodnius prolixus RPRC000264 I 0.677
six5 Tetraodon nigroviridis ENSTNIG00000007742 I 0.676
GL12751 Drosophila persimilis FBgn0150357 I 0.676
six5 Takifugu rubripes ENSTRUG00000011163 I 0.676
Pvit_16914 Pogona vitticeps Pvit_16914 I 0.675
six5 Gasterosteus aculeatus ENSGACG00000009721 I 0.671
L798_10542 Zootermopsis nevadensis L798_10542 I 0.669
ENSLOCG00000014840 Lepisosteus oculatus ENSLOCG00000014840 I 0.668
ISCW023235 Ixodes scapularis ISCW023235 I 0.667
ENSGMOG00000008067 Gadus morhua ENSGMOG00000008067 I 0.663
tetur06g00560 Tetranychus urticae tetur06g00560 I 0.662
SPU_017380 Strongylocentrotus purpuratus SPU_017380 I 0.661
CBG06764 Caenorhabditis briggsae CBG06764 I 0.658
CBN13130 Caenorhabditis brenneri CBN13130 I 0.658
ceh-33 Caenorhabditis elegans WBGene00000454 I 0.658
six45 Ciona intestinalis ENSCING00000004748 I 0.652
ENSCSAVG00000001518 Ciona savignyi ENSCSAVG00000001518 I 0.652
SIX4 Choloepus hoffmanni ENSCHOG00000005951 I 0.648
HelroG72129 Helobdella robusta HelroG72129 I 0.648
SMRZ_0000838301 Schistosoma margrebowiei SMRZ_0000838301 I 0.646
SVE_0935100 Strongyloides venezuelensis SVE_0935100 I 0.644
SPAL_0000663500 Strongyloides papillosus SPAL_0000663500 I 0.644
ENSTTRG00000001084 Tursiops truncatus ENSTTRG00000001084 I 0.644
SSTP_0000577700 Strongyloides stercoralis SSTP_0000577700 I 0.644
PTRK_0000425200 Parastrongyloides trichosuri PTRK_0000425200 I 0.644
six9 Oryzias latipes ENSORLG00000006757 I 0.643
L898_g28442 Steinernema monticolum L898_g28442 I 0.641
csin101618 Clonorchis sinensis csin101618 I 0.638
TRE_0000254801 Trichobilharzia regenti TRE_0000254801 I 0.638
T265_04509 Opisthorchis viverrini T265_04509 I 0.638
GB55286 Apis mellifera GB55286 I 0.630
EmuJ_000130200 Echinococcus multilocularis EmuJ_000130200 I 0.629
DILT_0001065601 Diphyllobothrium latum DILT_0001065601 I 0.629
HDID_0000865801 Hymenolepis diminuta HDID_0000865801 I 0.629
Smp_039470 Schistosoma mansoni Smp_039470 I 0.629
HmN_000307400 Hymenolepis microstoma HmN_000307400 I 0.629
HPLM_0001489701 Haemonchus placei HPLM_0001489701 I 0.625
HPBE_0001084301 Heligmosomoides bakeri HPBE_0001084301 I 0.625
ANCDUO_14963 Ancylostoma duodenale ANCDUO_14963 I 0.625
NBR_0000072001 Nippostrongylus brasiliensis NBR_0000072001 I 0.625
SVUK_0000475301 Strongylus vulgaris SVUK_0000475301 I 0.625
CGOC_0001175101 Cylicostephanus goldi CGOC_0001175101 I 0.625
ANCCAN_20712 Ancylostoma caninum ANCCAN_20712 I 0.625
nRc.2.0.1.g08154 Romanomermis culicivorax nRc.2.0.1.g08154 I 0.625
SBAD_0000431501 Soboliphyme baturini SBAD_0000431501 I 0.623
A_06874 Schistosoma haematobium A_06874 I 0.622
MhA1_Contig1753.frz3.fgene1 Meloidogyne hapla MhA1_Contig1753.frz3.fgene1 I 0.621
CJA00270 Caenorhabditis japonica CJA00270 I 0.620
SNAPOd2T00025245001 Oikopleura dioica SNAPOd2T00025245001 I 0.617
unc-39 Caenorhabditis elegans WBGene00006775 I 0.612
CBN23950 Caenorhabditis brenneri CBN23950 I 0.611
ALUE_0000011401 Ascaris lumbricoides ALUE_0000011401 I 0.611
CBG04628 Caenorhabditis briggsae CBG04628 I 0.611
DME_0000792901 Dracunculus medinensis DME_0000792901 I 0.611
ALUE_0001616301 Ascaris lumbricoides ALUE_0001616301 I 0.611
ASU_04955 Ascaris suum ASU_04955 I 0.611
SCUD_0000585201 Schistosoma curassoni SCUD_0000585201 I 0.607
SMTD_0001710001 Schistosoma mattheei SMTD_0001710001 I 0.607
A_05252 Schistosoma haematobium A_05252 I 0.607
SMRZ_0001033601 Schistosoma margrebowiei SMRZ_0001033601 I 0.607
HHAL006656-PA Halyomorpha halys HHAL006656-PA I 0.604
PHUM363270 Pediculus humanus PHUM363270 I 0.602