CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Rhox8
(
Rattus norvegicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSRNOG00000031534
T215465_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rhox8
M02103_2.00
Rattus norvegicus
NGGTGTWAH
DTWACACCN
PBM
Weirauch et al.(2014)
pTH6071
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02103_2.00
Homeodomain
1
57
SRNRHRFTEFQLQELERIFERNHYPSAAARRELARWIGVTESRVENWFKSRRAKYRK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000041820
Homeodomain
143
199
SRNRHRFTEFQLQELERIFERNHYPSAAARRELARWIGVTESRVENWFKSRRAKYRK
Links
Other
Homeodomain
family TFs
Other
Rattus norvegicus
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Rhox8
Mus musculus
ENSMUSG00000064137
I
0.693
ENSMUSG00000097126
Mus musculus
ENSMUSG00000097126
I
0.693
nAv.1.0.1.g03932
Acanthocheilonema viteae
nAv.1.0.1.g03932
I
0.654
ENSDORG00000003153
Dipodomys ordii
ENSDORG00000003153
I
0.635