GRMZM2G008286 (Zea mays)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GRMZM2G008286 T218950_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.624 0.611
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.606 0.556
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.606 0.556
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.606 0.556
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.606 0.537
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.606 0.537
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G008286_P01 Homeodomain 61 114

Links

Other Homeodomain family TFs
Other Zea mays TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G307397 Zea mays GRMZM2G307397 I 0.684
GRMZM2G477415 Zea mays GRMZM2G477415 I 0.675
GRMZM2G307400 Zea mays GRMZM2G307400 I 0.668
Pavir.J23758 Panicum virgatum Pavir.J23758 I 0.668
Eucgr.L00494 Eucalyptus grandis Eucgr.L00494 I 0.667
GRMZM5G830671 Zea mays GRMZM5G830671 I 0.664
orange1.1g022713m.g Citrus sinensis orange1.1g022713m.g I 0.662
SapurV1A.0821s0150 Salix purpurea SapurV1A.0821s0150 I 0.662
MDP0000238771 Malus domestica MDP0000238771 I 0.651
Sb10g028630 Sorghum bicolor Sb10g028630 I 0.648
Lus10039644.g Linum usitatissimum Lus10039644.g I 0.645
chr2.CM0021.170.nc Lotus japonicus chr2.CM0021.170.nc I 0.645
GRMZM2G366130 Zea mays GRMZM2G366130 I 0.644
MTR_5g013010 Medicago truncatula MTR_5g013010 I 0.640
Pavir.Da00162 Panicum virgatum Pavir.Da00162 I 0.637
OLONG_011261 Oryza longistaminata OLONG_011261 I 0.634
Si019736m.g Setaria italica Si019736m.g I 0.633
cassava17757.valid.m1 Manihot esculenta cassava17757.valid.m1 I 0.631
Gorai.007G086600 Gossypium raimondii Gorai.007G086600 I 0.631
AMTR_s00066p00143040 Amborella trichopoda AMTR_s00066p00143040 I 0.629
GLYMA17G15380 Glycine max GLYMA17G15380 I 0.629
GSMUA_Achr9G15710_001 Musa acuminata GSMUA_Achr9G15710_001 I 0.629
MTR_4g100550 Medicago truncatula MTR_4g100550 I 0.629
PGSC0003DMG400023707 Solanum tuberosum PGSC0003DMG400023707 I 0.629
Solyc10g080540.1 Solanum lycopersicum Solyc10g080540.1 I 0.629
Ca_12769 Cicer arietinum Ca_12769 I 0.629
30226.m002015 Ricinus communis 30226.m002015 I 0.629
mgf024542m Mimulus guttatus mgf024542m I 0.629
Eucgr.E01577 Eucalyptus grandis Eucgr.E01577 I 0.629
Eucgr.E02798 Eucalyptus grandis Eucgr.E02798 I 0.629
GSMUA_Achr6G30180_001 Musa acuminata GSMUA_Achr6G30180_001 I 0.625
GSMUA_Achr6G31710_001 Musa acuminata GSMUA_Achr6G31710_001 I 0.625
Si007238m.g Setaria italica Si007238m.g I 0.625
AMTR_s00026p00233150 Amborella trichopoda AMTR_s00026p00233150 I 0.624
HAT9 Arabidopsis thaliana AT2G22800 I 0.624
HAT22 Arabidopsis thaliana AT4G37790 D 0.624
BGIOSGA026851 Oryza indica BGIOSGA026851 I 0.624
HOX11 Oryza indica BGIOSGA029665 I 0.624
Bo1g003400 Brassica oleracea Bo1g003400 I 0.624
Bo3g153210 Brassica oleracea Bo3g153210 I 0.624
Bo4g151080 Brassica oleracea Bo4g151080 I 0.624
Bo7g118750 Brassica oleracea Bo7g118750 I 0.624
Bra010612 Brassica rapa Bra010612 I 0.624
Bra011786 Brassica rapa Bra011786 I 0.624
Bra017853 Brassica rapa Bra017853 I 0.624
Bra030200 Brassica rapa Bra030200 I 0.624
BRADI3G37810 Brachypodium distachyon BRADI3G37810 I 0.624
HAT9 Arabidopsis lyrata fgenesh2_kg.4__202__AT2G22800.1 I 0.624
HAT22 Arabidopsis lyrata fgenesh2_kg.7__270__AT4G37790.1 I 0.624
GLYMA11G04840 Glycine max GLYMA11G04840 I 0.624
GLYMA17G16930 Glycine max GLYMA17G16930 I 0.624
GRMZM2G127537 Zea mays GRMZM2G127537 I 0.624
GRMZM2G142962 Zea mays GRMZM2G142962 I 0.624
GSMUA_Achr8G26480_001 Musa acuminata GSMUA_Achr8G26480_001 I 0.624
GSMUA_Achr9G09800_001 Musa acuminata GSMUA_Achr9G09800_001 I 0.624
GSMUA_Achr9G26300_001 Musa acuminata GSMUA_Achr9G26300_001 I 0.624
GSMUA_AchrUn_randomG15520_001 Musa acuminata GSMUA_AchrUn_randomG15520_001 I 0.624
LPERR08G14440 Leersia perrieri LPERR08G14440 I 0.624
LPERR09G08720 Leersia perrieri LPERR09G08720 I 0.624
MTR_5g014890 Medicago truncatula MTR_5g014890 I 0.624
OBART09G12140 Oryza barthii OBART09G12140 I 0.624
OGLUM08G18270 Oryza glumaepatula OGLUM08G18270 I 0.624
OGLUM09G12570 Oryza glumaepatula OGLUM09G12570 I 0.624
OMERI08G14040 Oryza meridionalis OMERI08G14040 I 0.624
OMERI09G09650 Oryza meridionalis OMERI09G09650 I 0.624
ONIVA09G13320 Oryza nivara ONIVA09G13320 I 0.624
OPUNC08G15320 Oryza punctata OPUNC08G15320 I 0.624
OPUNC09G10660 Oryza punctata OPUNC09G10660 I 0.624
ORGLA08G0152800 Oryza glaberrima ORGLA08G0152800 I 0.624
ORUFI08G19510 Oryza rufipogon ORUFI08G19510 I 0.624
ORUFI09G13050 Oryza rufipogon ORUFI09G13050 I 0.624
POPTR_0005s19080 Populus trichocarpa POPTR_0005s19080 I 0.624
POPTR_0007s14590 Populus trichocarpa POPTR_0007s14590 I 0.624
PRUPE_ppa009614mg Prunus persica PRUPE_ppa009614mg I 0.624
Sb02g026150 Sorghum bicolor Sb02g026150 I 0.624
Sb07g022620 Sorghum bicolor Sb07g022620 I 0.624
Si014954m.g Setaria italica Si014954m.g I 0.624
Si030329m.g Setaria italica Si030329m.g I 0.624
TCM_000867 Theobroma cacao TCM_000867 I 0.624
Ca_02251 Cicer arietinum Ca_02251 I 0.624
Pm002327 Prunus mume Pm002327 I 0.624
cassava11733.valid.m1 Manihot esculenta cassava11733.valid.m1 I 0.624
Cucsa.242570 Cucumis sativus Cucsa.242570 I 0.624
e_gw1.42.227.1 Physcomitrella patens e_gw1.42.227.1 I 0.624
fgenesh1_pg.scaffold_42000146 Physcomitrella patens fgenesh1_pg.scaffold_42000146 I 0.624
Bostr.19427s0048 Boechera stricta Bostr.19427s0048 I 0.624
Bostr.25542s0240 Boechera stricta Bostr.25542s0240 I 0.624
Cagra.0630s0001 Capsella grandiflora Cagra.0630s0001 I 0.624
Cagra.0882s0002 Capsella grandiflora Cagra.0882s0002 I 0.624
Carubv10005427m.g Capsella rubella Carubv10005427m.g I 0.624
Carubv10023690m.g Capsella rubella Carubv10023690m.g I 0.624
Ciclev10026197m.g Citrus clementina Ciclev10026197m.g I 0.624
Eucgr.A02462 Eucalyptus grandis Eucgr.A02462 I 0.624
Eucgr.I00660 Eucalyptus grandis Eucgr.I00660 I 0.624
evm.TU.supercontig_129.55 Carica papaya evm.TU.supercontig_129.55 I 0.624
gene05590-v1.0-hybrid Fragaria vesca gene05590-v1.0-hybrid I 0.624
Gorai.007G057100 Gossypium raimondii Gorai.007G057100 I 0.624
Gorai.007G228000 Gossypium raimondii Gorai.007G228000 I 0.624
Gorai.008G086700 Gossypium raimondii Gorai.008G086700 I 0.624
MDP0000163095 Malus domestica MDP0000163095 I 0.624
Pavir.Fa00698 Panicum virgatum Pavir.Fa00698 I 0.624
Pavir.Fb01724 Panicum virgatum Pavir.Fb01724 I 0.624
Pavir.J20342 Panicum virgatum Pavir.J20342 I 0.624
Pavir.J36719 Panicum virgatum Pavir.J36719 I 0.624
SapurV1A.0608s0240 Salix purpurea SapurV1A.0608s0240 I 0.624
Thhalv10000281m.g Eutrema salsugineum Thhalv10000281m.g I 0.624
Thhalv10025923m.g Eutrema salsugineum Thhalv10025923m.g I 0.624
PK17334.1 Cannabis sativa PK17334.1 I 0.624
Cucsa.261750 Cucumis sativus Cucsa.261750 I 0.620
GSMUA_Achr7G06950_001 Musa acuminata GSMUA_Achr7G06950_001 I 0.619
Cucsa.259710 Cucumis sativus Cucsa.259710 I 0.619
MDP0000188716 Malus domestica MDP0000188716 I 0.619
AMTR_s00024p00164620 Amborella trichopoda AMTR_s00024p00164620 I 0.618
GLYMA01G41581 Glycine max GLYMA01G41581 I 0.618
GLYMA11G03850 Glycine max GLYMA11G03850 I 0.618
Ca_02329 Cicer arietinum Ca_02329 I 0.618
MDP0000131454 Malus domestica MDP0000131454 I 0.618
MDP0000142091 Malus domestica MDP0000142091 I 0.618
MDP0000670432 Malus domestica MDP0000670432 I 0.618
GLYMA18G48880 Glycine max GLYMA18G48880 I 0.617
GRMZM2G047715 Zea mays GRMZM2G047715 I 0.617
POPTR_0001s23680 Populus trichocarpa POPTR_0001s23680 I 0.617
POPTR_0009s02850 Populus trichocarpa POPTR_0009s02850 I 0.617
mgf012660m Mimulus guttatus mgf012660m I 0.617
SapurV1A.0008s0420 Salix purpurea SapurV1A.0008s0420 I 0.617
SapurV1A.0194s0140 Salix purpurea SapurV1A.0194s0140 I 0.617
HAT14 Arabidopsis thaliana AT5G06710 I 0.615
MLOC_60848 Hordeum vulgare MLOC_60848 I 0.615
OLONG_026984 Oryza longistaminata OLONG_026984 I 0.615
TRIUR3_34950 Triticum urartu TRIUR3_34950 I 0.615
cassava17756.valid.m1 Manihot esculenta cassava17756.valid.m1 I 0.615
Ciclev10021501m.g Citrus clementina Ciclev10021501m.g I 0.615
MDP0000135540 Malus domestica MDP0000135540 I 0.615
PGSC0003DMG400030494 Solanum tuberosum PGSC0003DMG400030494 I 0.614
Solyc05g008050.1 Solanum lycopersicum Solyc05g008050.1 I 0.614
HAT4 Arabidopsis thaliana AT4G16780 I 0.613
Bo1g053220 Brassica oleracea Bo1g053220 I 0.613
Bra040094 Brassica rapa Bra040094 I 0.613
OB02G28610 Oryza brachyantha OB02G28610 I 0.613
Cagra.0812s0021 Capsella grandiflora Cagra.0812s0021 I 0.613
Carubv10005275m.g Capsella rubella Carubv10005275m.g I 0.613
Thhalv10025903m.g Eutrema salsugineum Thhalv10025903m.g I 0.613
HOX7 Oryza indica BGIOSGA006230 I 0.612
GLYMA01G40450 Glycine max GLYMA01G40450 I 0.612
LPERR02G17070 Leersia perrieri LPERR02G17070 I 0.612
MTR_4g097600 Medicago truncatula MTR_4g097600 I 0.612
OBART02G21000 Oryza barthii OBART02G21000 I 0.612
OGLUM02G21270 Oryza glumaepatula OGLUM02G21270 I 0.612
OMERI02G20780 Oryza meridionalis OMERI02G20780 I 0.612
ONIVA02G23130 Oryza nivara ONIVA02G23130 I 0.612
OPUNC02G19040 Oryza punctata OPUNC02G19040 I 0.612
ORGLA02G0180800 Oryza glaberrima ORGLA02G0180800 I 0.612
ORUFI02G22050 Oryza rufipogon ORUFI02G22050 I 0.612
HOX7 Oryza sativa OS02G0565600 I 0.612
PGSC0003DMG400021423 Solanum tuberosum PGSC0003DMG400021423 I 0.612
Solyc02g091930.2 Solanum lycopersicum Solyc02g091930.2 I 0.612
Ca_09371 Cicer arietinum Ca_09371 I 0.612
Cla014275 Citrullus lanatus Cla014275 I 0.612
Cucsa.103500 Cucumis sativus Cucsa.103500 I 0.612
Aquca_017_00098 Aquilegia coerulea Aquca_017_00098 I 0.609
Bo6g094480 Brassica oleracea Bo6g094480 I 0.608
HAT1 Arabidopsis thaliana AT4G17460 D 0.606
HAT2 Arabidopsis thaliana AT5G47370 D 0.606
Bo1g051520 Brassica oleracea Bo1g051520 I 0.606
Bo7g077560 Brassica oleracea Bo7g077560 I 0.606
Bo7g105120 Brassica oleracea Bo7g105120 I 0.606
Bra012663 Brassica rapa Bra012663 I 0.606
Bra024948 Brassica rapa Bra024948 I 0.606
Bra026255 Brassica rapa Bra026255 I 0.606
HAT2 Arabidopsis lyrata fgenesh2_kg.8__61__AT5G47370.1 I 0.606
HAT1 Arabidopsis lyrata scaffold_702713.1 I 0.606
Bostr.14419s0034 Boechera stricta Bostr.14419s0034 I 0.606
Bostr.30275s0201 Boechera stricta Bostr.30275s0201 I 0.606
Cagra.3356s0035 Capsella grandiflora Cagra.3356s0035 I 0.606
Cagra.7985s0003 Capsella grandiflora Cagra.7985s0003 I 0.606
Carubv10005434m.g Capsella rubella Carubv10005434m.g I 0.606
Carubv10026931m.g Capsella rubella Carubv10026931m.g I 0.606
MDP0000913269 Malus domestica MDP0000913269 I 0.606
Thhalv10000990m.g Eutrema salsugineum Thhalv10000990m.g I 0.606
Thhalv10025921m.g Eutrema salsugineum Thhalv10025921m.g I 0.606
ATHB-17 Arabidopsis thaliana AT2G01430 I 0.604
mgf001702m Mimulus guttatus mgf001702m I 0.604
Cagra.2235s0001 Capsella grandiflora Cagra.2235s0001 I 0.604
Bo2g069680 Brassica oleracea Bo2g069680 I 0.603
mgf021369m Mimulus guttatus mgf021369m I 0.603
GSMUA_Achr4G21600_001 Musa acuminata GSMUA_Achr4G21600_001 I 0.602
MTR_1g017090 Medicago truncatula MTR_1g017090 I 0.602
mgf026123m Mimulus guttatus mgf026123m I 0.602
LjSGA_033176.1 Lotus japonicus LjSGA_033176.1 I 0.602
cassava19521.m1 Manihot esculenta cassava19521.m1 I 0.601