Solyc08g083130.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc08g083130.2 T223614_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.695 0.754
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.695 0.754
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.643 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g083130.2.1 Homeodomain 21 77

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D02645 Eucalyptus grandis Eucgr.D02645 I 0.751
Cla021437 Citrullus lanatus Cla021437 I 0.748
Cucsa.259560 Cucumis sativus Cucsa.259560 I 0.748
GSMUA_Achr1G18670_001 Musa acuminata GSMUA_Achr1G18670_001 I 0.741
mgf020022m Mimulus guttatus mgf020022m I 0.728
GLYMA07G05800 Glycine max GLYMA07G05800 I 0.700
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.695
GLYMA16G02390 Glycine max GLYMA16G02390 I 0.695
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.695
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.695
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.695
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.695
PK15571.1 Cannabis sativa PK15571.1 I 0.695
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I 0.694
PGSC0003DMG400000248 Solanum tuberosum PGSC0003DMG400000248 I 0.693
Solyc01g096320.2 Solanum lycopersicum Solyc01g096320.2 I 0.693
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.690
Bo4g007060 Brassica oleracea Bo4g007060 I 0.689
Bra004516 Brassica rapa Bra004516 I 0.689
Ca_04027 Cicer arietinum Ca_04027 I 0.682
PK03912.1 Cannabis sativa PK03912.1 I 0.678
TCM_015645 Theobroma cacao TCM_015645 I 0.672
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.667
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.667
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.667
TCM_005074 Theobroma cacao TCM_005074 I 0.663
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.663
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.662
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.662
27964.m000347 Ricinus communis 27964.m000347 I 0.662
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.662
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.662
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.662
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.662
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.662
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.661
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.661
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.658
VIT_02s0025g02590 Vitis vinifera VIT_02s0025g02590 I 0.656
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.656
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.655
OB04G27300 Oryza brachyantha OB04G27300 I 0.654
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.651
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.651
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.650
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.650
F775_29232 Aegilops tauschii F775_29232 I 0.650
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.650
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.650
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.650
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.650
OBART04G20320 Oryza barthii OBART04G20320 I 0.650
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.650
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.650
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.650
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.650
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.650
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.650
Si010550m.g Setaria italica Si010550m.g I 0.650
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.650
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.650
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.650
Gorai.008G258900 Gossypium raimondii Gorai.008G258900 I 0.650
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.650
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.650
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.649
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.649
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.649
MDP0000615948 Malus domestica MDP0000615948 I 0.649
MDP0000899816 Malus domestica MDP0000899816 I 0.649
Cla002451 Citrullus lanatus Cla002451 I 0.648
gene12765-v1.0-hybrid Fragaria vesca gene12765-v1.0-hybrid I 0.646
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I 0.644
TCM_015486 Theobroma cacao TCM_015486 I 0.644
Pm019693 Prunus mume Pm019693 I 0.644
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.644
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.644
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.643
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.643
Ciclev10022253m.g Citrus clementina Ciclev10022253m.g I 0.640
orange1.1g027468m.g Citrus sinensis orange1.1g027468m.g I 0.640
POPTR_0001s11380 Populus trichocarpa POPTR_0001s11380 I 0.635
cassava21654.m1 Manihot esculenta cassava21654.m1 I 0.633
30089.m001006 Ricinus communis 30089.m001006 I 0.632
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.622
Gorai.003G094500 Gossypium raimondii Gorai.003G094500 I 0.618
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I 0.609
F775_30064 Aegilops tauschii F775_30064 I 0.609
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I 0.607
Gorai.007G016800 Gossypium raimondii Gorai.007G016800 I 0.606
HOX24 Oryza indica BGIOSGA008720 I 0.605
GRMZM2G117164 Zea mays GRMZM2G117164 I 0.605
OGLUM02G26440 Oryza glumaepatula OGLUM02G26440 I 0.605
OMERI02G25450 Oryza meridionalis OMERI02G25450 I 0.605
ONIVA02G28400 Oryza nivara ONIVA02G28400 I 0.605
OPUNC02G23740 Oryza punctata OPUNC02G23740 I 0.605
ORGLA02G0222500 Oryza glaberrima ORGLA02G0222500 I 0.605
ORUFI02G27420 Oryza rufipogon ORUFI02G27420 I 0.605
HOX24 Oryza sativa OS02G0649300 I 0.605
Sb04g033380 Sorghum bicolor Sb04g033380 I 0.605
Si018237m.g Setaria italica Si018237m.g I 0.605
Pavir.Ab02438 Panicum virgatum Pavir.Ab02438 I 0.605
Pavir.J39801 Panicum virgatum Pavir.J39801 I 0.603
SapurV1A.0094s0260 Salix purpurea SapurV1A.0094s0260 I 0.602
GSMUA_Achr9G18360_001 Musa acuminata GSMUA_Achr9G18360_001 I 0.601