CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nsy-7
(
Caenorhabditis elegans
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
WBGene00044508
T224681_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nsy-7
M00966_2.00
Caenorhabditis elegans
TTAAGGBN
NVCCTTAA
PBM
Lesch et al.(2009)
Nsy-7
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00966_2.00
Homeodomain
191
234
LQTRMKGWQREYIKEVIKDSHYPTEEELRDIEQKCDLSRKQILR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C18F3.4a
Homeodomain
191
234
LQTRMKGWQREYIKEVIKDSHYPTEEELRDIEQKCDLSRKQILR
Links
Other
Homeodomain
family TFs
Other
Caenorhabditis elegans
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HmN_000713700
Hymenolepis microstoma
HmN_000713700
I
0.680
ANCDUO_20566
Ancylostoma duodenale
ANCDUO_20566
I
0.613