CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Hsal_13323--XP_001122398.1_APIME
(
Harpegnathos saltator
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Hsal_13323--XP_001122398.1_APIME
T226314_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN
NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.610
0.754
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.610
0.754
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC
GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.610
0.754
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.606
0.754
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.606
0.754
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.606
0.754
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.606
0.754
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.606
0.754
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.606
0.754
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.606
0.754
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.606
0.754
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.606
0.754
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.606
0.754
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Hsal_13323--XP_001122398.1_APIME
Homeodomain
4
60
DKYRVVYTDYQRLELEKEFHFNRYITMRRKAELAKTLGLTERQVSKWCQNERTRRRM
Links
Other
Homeodomain
family TFs
Other
Harpegnathos saltator
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cdx1b
Takifugu rubripes
ENSTRUG00000007928
I
0.612
Cdx2
Mus musculus
ENSMUSG00000029646
D
0.610
ENSAMXG00000016994
Astyanax mexicanus
ENSAMXG00000016994
I
0.608
ENSACAG00000003334
Anolis carolinensis
ENSACAG00000003334
I
0.606
ENSACAG00000015334
Anolis carolinensis
ENSACAG00000015334
I
0.606
ENSAMEG00000002400
Ailuropoda melanoleuca
ENSAMEG00000002400
I
0.606
ENSBTAG00000001819
Bos taurus
ENSBTAG00000001819
I
0.606
CDX2
Canis familiaris
ENSCAFG00000006742
I
0.606
CDX2
Callithrix jacchus
ENSCJAG00000019398
I
0.606
CDX2
Cavia porcellus
ENSCPOG00000007276
I
0.606
ENSCSAG00000017976
Chlorocebus sabaeus
ENSCSAG00000017976
I
0.606
CDX2
Dasypus novemcinctus
ENSDNOG00000035260
I
0.606
Cdx2
Dipodomys ordii
ENSDORG00000005495
I
0.606
CDX2
Equus caballus
ENSECAG00000000707
I
0.606
CDX2
Erinaceus europaeus
ENSEEUG00000005045
I
0.606
CDX2
Echinops telfairi
ENSETEG00000018589
I
0.606
CDX2
Felis catus
ENSFCAG00000026699
I
0.606
CDX2
Homo sapiens
ENSG00000165556
D
0.606
CDX2
Gorilla gorilla
ENSGGOG00000005487
I
0.606
CDX2
Loxodonta africana
ENSLAFG00000030146
I
0.606
ENSMEUG00000003391
Macropus eugenii
ENSMEUG00000003391
I
0.606
ENSMICG00000000751
Microcebus murinus
ENSMICG00000000751
I
0.606
ENSMLUG00000002563
Myotis lucifugus
ENSMLUG00000002563
I
0.606
ENSMMUG00000016137
Macaca mulatta
ENSMMUG00000016137
I
0.606
CDX2
Monodelphis domestica
ENSMODG00000009021
I
0.606
ENSMPUG00000005092
Mustela putorius furo
ENSMPUG00000005092
I
0.606
ENSOARG00000012435
Ovis aries
ENSOARG00000012435
I
0.606
CDX2
Oryctolagus cuniculus
ENSOCUG00000004893
I
0.606
CDX1
Oryctolagus cuniculus
ENSOCUG00000012479
I
0.606
CDX2
Otolemur garnettii
ENSOGAG00000026117
I
0.606
CDX2
Ochotona princeps
ENSOPRG00000003043
I
0.606
ENSOPRG00000008290
Ochotona princeps
ENSOPRG00000008290
I
0.606
ENSPANG00000024013
Papio anubis
ENSPANG00000024013
I
0.606
CDX2
Procavia capensis
ENSPCAG00000010752
I
0.606
ENSPPYG00000005242
Pongo abelii
ENSPPYG00000005242
I
0.606
ENSPSIG00000012291
Pelodiscus sinensis
ENSPSIG00000012291
I
0.606
ENSPSIG00000014400
Pelodiscus sinensis
ENSPSIG00000014400
I
0.606
ENSPTRG00000005738
Pan troglodytes
ENSPTRG00000005738
I
0.606
CDX2
Pteropus vampyrus
ENSPVAG00000011522
I
0.606
Cdx2
Rattus norvegicus
ENSRNOG00000032759
I
0.606
ENSSHAG00000017862
Sarcophilus harrisii
ENSSHAG00000017862
I
0.606
CDX2
Sus scrofa
ENSSSCG00000009317
I
0.606
ENSSTOG00000002918
Ictidomys tridecemlineatus
ENSSTOG00000002918
I
0.606
CDX2
Tupaia belangeri
ENSTBEG00000006155
I
0.606
Cmyd_10009948
Chelonia mydas
Cmyd_10009948
I
0.606
ENSBTAP00000002378-D1
Bos grunniens
ENSBTAP00000002378-D1
I
0.606
ENSMMUP00000021225
Macaca fascicularis
ENSMMUP00000021225
I
0.606
Myotis_brandtii_CDX2_10026424
Myotis brandtii
Myotis_brandtii_CDX2_10026424
I
0.606
Ogr12616
Ophisaurus gracilis
Ogr12616
I
0.606
Pvit_18553
Pogona vitticeps
Pvit_18553
I
0.606
cdx1b
Gasterosteus aculeatus
ENSGACG00000001779
I
0.605
ENSONIG00000013073
Oreochromis niloticus
ENSONIG00000013073
I
0.602
ENSPFOG00000003207
Poecilia formosa
ENSPFOG00000003207
I
0.601
ENSTNIG00000000021
Tetraodon nigroviridis
ENSTNIG00000000021
I
0.601
ENSXMAG00000008549
Xiphophorus maculatus
ENSXMAG00000008549
I
0.601