fgenesh2_pg.scaffold_134000014 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_134000014 T227506_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CG34031
M02126_2.00 		Drosophila melanogaster
NNNDNNRN
NYNNHNNN		 PBM
Weirauch et al.(2014)
pTH6447 		0.630 0.737
CG34031
M06548_2.00 		Drosophila melanogaster
TTAATWG
CWATTAA		 B1H
Mathelier et al.(2014)
MA0444.1 		0.630 0.737
CG34031
M06372_2.00 		Drosophila melanogaster
BTTAATWG
CWATTAAV		 B1H
Zhu et al.(2011)
CG34031_Cell_FBgn0054031 		0.630 0.737
CG34031
M06373_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
CG34031_SOLEXA_FBgn0054031 		0.630 0.737
ceh-19
M02180_2.00 		Caenorhabditis elegans
NTWAWDRNN
NNYHWTWAN		 PBM
Weirauch et al.(2014)
pTH5661 		0.617 0.614
Nkx1-1
M00442_2.00 		Mus musculus
NNTAATNDNN
NNHNATTANN		 PBM
Berger et al.(2008)
Nkx1-1_3856 		0.609 0.596
slou
M00557_2.00 		Drosophila melanogaster
NNTAATDRN
NYHATTANN		 PBM
Busser et al.(2012a)
Slou 		0.609 0.596
slou
M03798_2.00 		Drosophila melanogaster
VBTAATTRSB
VSYAATTAVB		 SELEX
Nitta et al.(2015)
slou_1 		0.609 0.596
slou
M06494_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Mathelier et al.(2014)
MA0245.1 		0.609 0.596
slou
M06262_2.00 		Drosophila melanogaster
BYTAATKR
YMATTARV		 B1H
Zhu et al.(2011)
Slou_Cell_FBgn0002941 		0.609 0.596
slou
M06263_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Zhu et al.(2011)
Slou_SOLEXA_FBgn0002941 		0.609 0.596
Nkx1-2
M00503_2.00 		Mus musculus
NNTAAWNDN
NHNWTTANN		 PBM
Berger et al.(2008)
Nkx1-2_3214 		0.608 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_134000014 Homeodomain 115 171

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0000444101 Ascaris lumbricoides ALUE_0000444101 I 0.635
ASU_04337 Ascaris suum ASU_04337 I 0.635
PEQ_0000380401 Parascaris equorum PEQ_0000380401 I 0.635
SMU15016057 Schmidtea mediterranea SMU15016057 I 0.633
CpipJ_CPIJ011541 Culex pipiens CpipJ_CPIJ011541 I 0.631
CPIJ011541 Culex quinquefasciatus CPIJ011541 I 0.631
GB49984 Apis mellifera GB49984 I 0.631
LCUP016407 Lucilia cuprina LCUP016407 I 0.631
LDEC003580 Leptinotarsa decemlineata LDEC003580 I 0.631
CG34031 Drosophila melanogaster FBgn0054031 D 0.630
Q2PE40_DROME Drosophila melanogaster Q2PE40_DROME I 0.630
DICVIV_09301 Dictyocaulus viviparus DICVIV_09301 I 0.630
Hba_06466 Heterorhabditis bacteriophora Hba_06466 I 0.630
HCOI00175700 Haemonchus contortus HCOI00175700 I 0.630
HCOI01954600 Haemonchus contortus HCOI01954600 I 0.630
NECAME_00457 Necator americanus NECAME_00457 I 0.630
OESDEN_01506 Oesophagostomum dentatum OESDEN_01506 I 0.630
CJA07729 Caenorhabditis japonica CJA07729 I 0.629
A_07224 Schistosoma haematobium A_07224 I 0.625
Sakowv30014246m.g Saccoglossus kowalevskii Sakowv30014246m.g I 0.624
SMAR006886 Strigamia maritima SMAR006886 I 0.623
Ppa-ceh-19 Pristionchus pacificus PPA16223 I 0.622
SMU15037813 Schmidtea mediterranea SMU15037813 I 0.622
scaffold330-EXSNAP2012.16 Pristionchus exspectatus scaffold330-EXSNAP2012.16 I 0.622
BXY_1152800 Bursaphelenchus xylophilus BXY_1152800 I 0.621
ENSAPLG00000016357 Anas platyrhynchos ENSAPLG00000016357 I 0.620
ACEP19392 Atta cephalotes ACEP19392 I 0.619
ACYPI42465 Acyrthosiphon pisum ACYPI42465 I 0.619
BGIBMGA012499 Bombyx mori BGIBMGA012499 I 0.619
KGM_16361 Danaus plexippus KGM_16361 I 0.619
L798_02442 Zootermopsis nevadensis L798_02442 I 0.619
MCINX001985 Melitaea cinxia MCINX001985 I 0.619
NV14134 Nasonia vitripennis NV14134 I 0.619
PHUM606500 Pediculus humanus PHUM606500 I 0.619
RPRC000954 Rhodnius prolixus RPRC000954 I 0.619
SINV22427 Solenopsis invicta SINV22427 I 0.619
TC001164 Tribolium castaneum TC001164 I 0.619
YQE_08078 Dendroctonus ponderosae YQE_08078 I 0.619
Cflo_01350--XP_001122544.1_APIME Camponotus floridanus Cflo_01350--XP_001122544.1_APIME I 0.619
Hsal_01133--XP_001122544.1_APIME Harpegnathos saltator Hsal_01133--XP_001122544.1_APIME I 0.619
PPAI000517 Phlebotomus papatasi PPAI000517 I 0.619
ANCCEY_13266 Ancylostoma ceylanicum ANCCEY_13266 I 0.619
nRc.2.0.1.g02146 Romanomermis culicivorax nRc.2.0.1.g02146 I 0.619
SMUV_0000895701 Syphacia muris SMUV_0000895701 I 0.619
TCNE_0001025801 Toxocara canis TCNE_0001025801 I 0.619
MDOA014719 Musca domestica MDOA014719 I 0.618
L889_g935 Steinernema feltiae L889_g935 I 0.618
L893_g16008 Steinernema glaseri L893_g16008 I 0.618
L898_g32563 Steinernema monticolum L898_g32563 I 0.618
CBG17719 Caenorhabditis briggsae CBG17719 I 0.617
CBN19084 Caenorhabditis brenneri CBN19084 I 0.617
CRE27973 Caenorhabditis remanei CRE27973 I 0.617
ceh-19 Caenorhabditis elegans WBGene00000442 D 0.617
L596_g24598 Steinernema carpocapsae L596_g24598 I 0.617
L892_g3515 Steinernema scapterisci L892_g3515 I 0.617
PTRK_0000810400 Parastrongyloides trichosuri PTRK_0000810400 I 0.616
SPAL_0000203700 Strongyloides papillosus SPAL_0000203700 I 0.616
SSTP_0001096700 Strongyloides stercoralis SSTP_0001096700 I 0.616
SVE_0747200 Strongyloides venezuelensis SVE_0747200 I 0.616
CpipJ_CPIJ019260 Culex pipiens CpipJ_CPIJ019260 I 0.609
AAEL013405 Aedes aegypti AAEL013405 I 0.609
ACYPI29629 Acyrthosiphon pisum ACYPI29629 I 0.609
ADAC000511 Anopheles darlingi ADAC000511 I 0.609
AGAP000484 Anopheles gambiae AGAP000484 I 0.609
BGIBMGA010833 Bombyx mori BGIBMGA010833 I 0.609
CapteG78648 Capitella teleta CapteG78648 I 0.609
CGI_10025189 Crassostrea gigas CGI_10025189 I 0.609
CPIJ019260 Culex quinquefasciatus CPIJ019260 I 0.609
NKX1-1 Canis familiaris ENSCAFG00000031073 I 0.609
ENSCPOG00000021447 Cavia porcellus ENSCPOG00000021447 I 0.609
ENSCSAG00000015596 Chlorocebus sabaeus ENSCSAG00000015596 I 0.609
nkx1.2lb Danio rerio ENSDARG00000099427 I 0.609
ENSDNOG00000036594 Dasypus novemcinctus ENSDNOG00000036594 I 0.609
NKX1-1 Homo sapiens ENSG00000235608 I 0.609
ENSGACG00000019218 Gasterosteus aculeatus ENSGACG00000019218 I 0.609
ENSGALG00000025723 Gallus gallus ENSGALG00000025723 I 0.609
ENSGMOG00000010722 Gadus morhua ENSGMOG00000010722 I 0.609
ENSLACG00000004504 Latimeria chalumnae ENSLACG00000004504 I 0.609
ENSLAFG00000025171 Loxodonta africana ENSLAFG00000025171 I 0.609
ENSLOCG00000010999 Lepisosteus oculatus ENSLOCG00000010999 I 0.609
Nkx1-1 Mus musculus ENSMUSG00000029112 D 0.609
NKX1-1 Otolemur garnettii ENSOGAG00000034822 I 0.609
ENSONIG00000011596 Oreochromis niloticus ENSONIG00000011596 I 0.609
ENSPANG00000006703 Papio anubis ENSPANG00000006703 I 0.609
ENSPFOG00000010222 Poecilia formosa ENSPFOG00000010222 I 0.609
Nkx1-1 Rattus norvegicus ENSRNOG00000005113 I 0.609
nkx1.2lb Tetraodon nigroviridis ENSTNIG00000006345 I 0.609
nkx1.2lb Takifugu rubripes ENSTRUG00000009389 I 0.609
ENSXMAG00000017541 Xiphophorus maculatus ENSXMAG00000017541 I 0.609
slou Drosophila melanogaster FBgn0002941 D 0.609
GA19667 Drosophila pseudoobscura FBgn0079663 I 0.609
GF16414 Drosophila ananassae FBgn0093435 I 0.609
GG14462 Drosophila erecta FBgn0106721 I 0.609
GH13609 Drosophila grimshawi FBgn0121085 I 0.609
GI24800 Drosophila mojavensis FBgn0147522 I 0.609
GM11004 Drosophila sechellia FBgn0165949 I 0.609
GD19974 Drosophila simulans FBgn0191457 I 0.609
GJ24446 Drosophila virilis FBgn0211526 I 0.609
GK14259 Drosophila willistoni FBgn0216265 I 0.609
GE24972 Drosophila yakuba FBgn0242066 I 0.609
GB50532 Apis mellifera GB50532 I 0.609
HMEL013187 Heliconius melpomene HMEL013187 I 0.609
ISCW005223 Ixodes scapularis ISCW005223 I 0.609
KGM_08296 Danaus plexippus KGM_08296 I 0.609
L798_08919 Zootermopsis nevadensis L798_08919 I 0.609
LotgiG100213 Lottia gigantea LotgiG100213 I 0.609
LotgiG99849 Lottia gigantea LotgiG99849 I 0.609
MCINX011862 Melitaea cinxia MCINX011862 I 0.609
NEMVEDRAFT_v1g197493 Nematostella vectensis NEMVEDRAFT_v1g197493 I 0.609
NV12623 Nasonia vitripennis NV12623 I 0.609
PHUM433380 Pediculus humanus PHUM433380 I 0.609
Ppa-ceh-1 Pristionchus pacificus PPA23479 I 0.609
RPRC000936 Rhodnius prolixus RPRC000936 I 0.609
SMAR005412 Strigamia maritima SMAR005412 I 0.609
SPU_012491 Strongylocentrotus purpuratus SPU_012491 I 0.609
TC012332 Tribolium castaneum TC012332 I 0.609
YQE_12820 Dendroctonus ponderosae YQE_12820 I 0.609
estExt_fgenesh2_pg.C_1850055 Branchiostoma floridae estExt_fgenesh2_pg.C_1850055 I 0.609
fgenesh2_pg.scaffold_185000054 Branchiostoma floridae fgenesh2_pg.scaffold_185000054 I 0.609
Ocbimv22009169m.g Octopus bimaculoides Ocbimv22009169m.g I 0.609
Ocbimv22021570m.g Octopus bimaculoides Ocbimv22021570m.g I 0.609
Sakowv30007134m.g Saccoglossus kowalevskii Sakowv30007134m.g I 0.609
CLEC002972 Cimex lectularius CLEC002972 I 0.609
HHAL009866-PA Halyomorpha halys HHAL009866-PA I 0.609
HHAL011305-PA Halyomorpha halys HHAL011305-PA I 0.609
LCUP006696 Lucilia cuprina LCUP006696 I 0.609
LDEC011522 Leptinotarsa decemlineata LDEC011522 I 0.609
Sjc_0009580 Schistosoma japonicum Sjc_0009580 I 0.609
SMU15024651 Schmidtea mediterranea SMU15024651 I 0.609
nkx1-1 Xenopus tropicalis XB-GENE-488879 I 0.609
AARA000396 Anopheles arabiensis AARA000396 I 0.609
AATE013980 Anopheles atroparvus AATE013980 I 0.609
ACHR004580 Anopheles christyi ACHR004580 I 0.609
ACUA007355 Anopheles culicifacies ACUA007355 I 0.609
ADIR001372 Anopheles dirus ADIR001372 I 0.609
AEPI009372 Anopheles epiroticus AEPI009372 I 0.609
AFAF011982 Anopheles farauti AFAF011982 I 0.609
AFUN008166 Anopheles funestus AFUN008166 I 0.609
AMAM005972 Anopheles maculatus AMAM005972 I 0.609
AMEC018527 Anopheles melas AMEC018527 I 0.609
AMEM012771 Anopheles merus AMEM012771 I 0.609
AMIN005226 Anopheles minimus AMIN005226 I 0.609
AQUA008031 Anopheles quadriannulatus AQUA008031 I 0.609
ASIS011532 Anopheles sinensis ASIS011532 I 0.609
ASTEI04487 Anopheles stephensi ASTEI04487 I 0.609
LLOJ006856 Lutzomyia longipalpis LLOJ006856 I 0.609
MDOA006110 Musca domestica MDOA006110 I 0.609
PPAI004617 Phlebotomus papatasi PPAI004617 I 0.609
A_00307 Schistosoma haematobium A_00307 I 0.609
D917_01694 Trichinella nativa D917_01694 I 0.609
D917_01700 Trichinella nativa D917_01700 I 0.609
D918_07111 Trichuris suis D918_07111 I 0.609
MCOS_0000660501 Mesocestoides corti MCOS_0000660501 I 0.609
scaffold279-EXSNAP2012.15 Pristionchus exspectatus scaffold279-EXSNAP2012.15 I 0.609
SCUD_0000395601 Schistosoma curassoni SCUD_0000395601 I 0.609
SMTD_0000863301 Schistosoma mattheei SMTD_0000863301 I 0.609
TMUE_s0004009300 Trichuris muris TMUE_s0004009300 I 0.609
TRE_0000267801 Trichobilharzia regenti TRE_0000267801 I 0.609
TTRE_0000380601 Trichuris trichiura TTRE_0000380601 I 0.609
CapteG30886 Capitella teleta CapteG30886 I 0.608
NKX1-2 Anolis carolinensis ENSACAG00000022361 I 0.608
ENSAMXG00000002210 Astyanax mexicanus ENSAMXG00000002210 I 0.608
NKX1-2 Bos taurus ENSBTAG00000020918 I 0.608
NKX1-2 Canis familiaris ENSCAFG00000031292 I 0.608
ENSCSAG00000004528 Chlorocebus sabaeus ENSCSAG00000004528 I 0.608
nkx1.2la Danio rerio ENSDARG00000006350 I 0.608
ENSFALG00000004783 Ficedula albicollis ENSFALG00000004783 I 0.608
NKX1-2 Homo sapiens ENSG00000229544 I 0.608
nkx1.2la Gasterosteus aculeatus ENSGACG00000009698 I 0.608
ENSGALG00000023406 Gallus gallus ENSGALG00000023406 I 0.608
ENSGMOG00000018326 Gadus morhua ENSGMOG00000018326 I 0.608
ENSLACG00000015234 Latimeria chalumnae ENSLACG00000015234 I 0.608
ENSLOCG00000008089 Lepisosteus oculatus ENSLOCG00000008089 I 0.608
ENSMPUG00000002742 Mustela putorius furo ENSMPUG00000002742 I 0.608
Nkx1-2 Mus musculus ENSMUSG00000048528 D 0.608
ENSONIG00000000526 Oreochromis niloticus ENSONIG00000000526 I 0.608
nkx1.2la Oryzias latipes ENSORLG00000005612 I 0.608
ENSPANG00000020330 Papio anubis ENSPANG00000020330 I 0.608
ENSPFOG00000017884 Poecilia formosa ENSPFOG00000017884 I 0.608
ENSPPYG00000002739 Pongo abelii ENSPPYG00000002739 I 0.608
Nkx1-2 Rattus norvegicus ENSRNOG00000017006 I 0.608
NKX1-2 Sus scrofa ENSSSCG00000010733 I 0.608
ENSSTOG00000021286 Ictidomys tridecemlineatus ENSSTOG00000021286 I 0.608
nkx1.2la Tetraodon nigroviridis ENSTNIG00000013347 I 0.608
nkx1.2la Takifugu rubripes ENSTRUG00000001257 I 0.608
ENSXMAG00000019481 Xiphophorus maculatus ENSXMAG00000019481 I 0.608
Ogr11465 Ophisaurus gracilis Ogr11465 I 0.608
Pvit_14175 Pogona vitticeps Pvit_14175 I 0.608
EmuJ_000867900 Echinococcus multilocularis EmuJ_000867900 I 0.608
RSKR_0000751200 Rhabditophanes kr3021 RSKR_0000751200 I 0.606
DILT_0001041601 Diphyllobothrium latum DILT_0001041601 I 0.604
ECANG7_06690 Echinococcus canadensis ECANG7_06690 I 0.604
EmuJ_000444300 Echinococcus multilocularis EmuJ_000444300 I 0.604
HmN_000601100 Hymenolepis microstoma HmN_000601100 I 0.604
HNAJ_0000006701 Hymenolepis nana HNAJ_0000006701 I 0.604
MCOS_0000337601 Mesocestoides corti MCOS_0000337601 I 0.604
TASK_0000792901 Taenia asiatica TASK_0000792901 I 0.604
TsM_000371000 Taenia solium TsM_000371000 I 0.604
TTAC_0000215101 Hydatigera taeniaeformis TTAC_0000215101 I 0.604
HelroG127374 Helobdella robusta HelroG127374 I 0.603
Minc01292 Meloidogyne incognita Minc01292 I 0.603
snap_masked-nMf.1.1.scaf12486-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf12486-processed-gene-0.2 I 0.603
AATE014015 Anopheles atroparvus AATE014015 I 0.600
ASIS001395 Anopheles sinensis ASIS001395 I 0.600
AGAP013373 Anopheles gambiae AGAP013373 I 0.599
AARA001041 Anopheles arabiensis AARA001041 I 0.599
ACOM031146 Anopheles coluzzii ACOM031146 I 0.599
ADIR004637 Anopheles dirus ADIR004637 I 0.599
AFAF019137 Anopheles farauti AFAF019137 I 0.599
AMAM008554 Anopheles maculatus AMAM008554 I 0.599
AMEC008960 Anopheles melas AMEC008960 I 0.599
AMEM017086 Anopheles merus AMEM017086 I 0.599
AMIN005093 Anopheles minimus AMIN005093 I 0.599
AQUA002501 Anopheles quadriannulatus AQUA002501 I 0.599
ASTEI09804 Anopheles stephensi ASTEI09804 I 0.599
BXY_1246700 Bursaphelenchus xylophilus BXY_1246700 I 0.599