CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb03127
(
Panicum virgatum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pavir.Eb03127
T229256_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb03127.1.p
Homeodomain
763
815
GRKFGPIVTQKLKVHFDEDPYPSRATKENLAQELGLTFNQVCRWFSSTRHYSR
Pavir.Eb03127.1.p
Homeodomain
976
1028
KYHFGPIVNQKLKAHFEKDPYPSRSTKESLAQELGLTFNQVSKWFSAIRHYSR
Links
Other
Homeodomain
family TFs
Other
Panicum virgatum
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb03g034510
Sorghum bicolor
Sb03g034510
N
0.805
GRMZM2G314546
Zea mays
GRMZM2G314546
N
0.795
Si000036m.g
Setaria italica
Si000036m.g
N
0.693
GRMZM2G351018
Zea mays
GRMZM2G351018
N
0.659