Pavir.Ib01030 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ib01030 T229309_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01030.1.p Homeodomain 17 72

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J13571 Panicum virgatum Pavir.J13571 N 0.867
OGLUM07G22360 Oryza glumaepatula OGLUM07G22360 N 0.825
ONIVA07G21870 Oryza nivara ONIVA07G21870 N 0.825
ORUFI07G23500 Oryza rufipogon ORUFI07G23500 N 0.825
OBART07G22470 Oryza barthii OBART07G22470 N 0.825
BGIOSGA026156 Oryza indica BGIOSGA026156 N 0.825
OPUNC07G21080 Oryza punctata OPUNC07G21080 N 0.825
OB07G27970 Oryza brachyantha OB07G27970 N 0.825
LPERR07G19470 Leersia perrieri LPERR07G19470 N 0.825
OMERI07G18770 Oryza meridionalis OMERI07G18770 N 0.823
Traes_3DS_796E4C73A Triticum aestivum Traes_3DS_796E4C73A N 0.810
TRIUR3_01802 Triticum urartu TRIUR3_01802 N 0.810
TRIUR3_27662 Triticum urartu TRIUR3_27662 N 0.810
TRAES3BF066700010CFD_g Triticum aestivum TRAES3BF066700010CFD_g N 0.810
F775_28106 Aegilops tauschii F775_28106 N 0.810
Traes_2AS_A117C8692 Triticum aestivum Traes_2AS_A117C8692 N 0.810
Traes_2BS_2530470BF Triticum aestivum Traes_2BS_2530470BF N 0.810
Traes_2DS_199F7B30E Triticum aestivum Traes_2DS_199F7B30E N 0.797
OS07G0619600 Oryza sativa OS07G0619600 N 0.793
MLOC_6327 Hordeum vulgare MLOC_6327 N 0.789
Si033977m.g Setaria italica Si033977m.g N 0.718
GRMZM2G151266 Zea mays GRMZM2G151266 N 0.603