HCOI00303400 (Haemonchus contortus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HCOI00303400 T234172_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.606 0.368
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.606 0.368
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.606 0.368
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.606 0.368
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.606 0.368
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.606 0.368
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.606 0.368
ceh-58
M00676_2.00 		Caenorhabditis elegans
NNTAATTRNN
NNYAATTANN		 PBM
Narasimhan et al.(2015)
pTH9923 		0.599 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HCOI00303400.t1 Homeodomain 224 282

Links

Other Homeodomain family TFs
Other Haemonchus contortus TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_09701 Ancylostoma caninum ANCCAN_09701 N 0.808
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I 0.627
CRE02070 Caenorhabditis remanei CRE02070 I 0.611
hoxd12a Oryzias latipes ENSORLG00000017536 I 0.608
hoxd12a Gasterosteus aculeatus ENSGACG00000004574 I 0.608
ENSGMOG00000004313 Gadus morhua ENSGMOG00000004313 I 0.608
hoxd12a Takifugu rubripes ENSTRUG00000017534 I 0.608
hoxd12a Tetraodon nigroviridis ENSTNIG00000001777 I 0.608
ENSONIG00000008617 Oreochromis niloticus ENSONIG00000008617 I 0.608
HOXC12 Pan troglodytes ENSPTRG00000005026 I 0.606
HOXC12 Pteropus vampyrus ENSPVAG00000012297 I 0.606
Hoxc12 Rattus norvegicus ENSRNOG00000016116 I 0.606
ENSPSIG00000004903 Pelodiscus sinensis ENSPSIG00000004903 I 0.606
ENSPANG00000010379 Papio anubis ENSPANG00000010379 I 0.606
ENSONIG00000012233 Oreochromis niloticus ENSONIG00000012233 I 0.606
HOXC12 Otolemur garnettii ENSOGAG00000025383 I 0.606
hoxc12a Oryzias latipes ENSORLG00000007902 I 0.606
ENSPFOG00000002075 Poecilia formosa ENSPFOG00000002075 I 0.606
ENSPFOG00000013995 Poecilia formosa ENSPFOG00000013995 I 0.606
ENSPPYG00000004589 Pongo abelii ENSPPYG00000004589 I 0.606
hoxc12a Tetraodon nigroviridis ENSTNIG00000001773 I 0.606
ENSP00000243103-D1 Bos grunniens ENSP00000243103-D1 I 0.606
Brh_R005179 Buceros rhinoceros Brh_R005179 I 0.606
ENSP00000243103 Macaca fascicularis ENSP00000243103 I 0.606
Ogr02756 Ophisaurus gracilis Ogr02756 I 0.606
hoxc12 Xenopus tropicalis XB-GENE-853677 I 0.606
Tal_R008153 Tyto alba Tal_R008153 I 0.606
Afo_R003393 Aptenodytes forsteri Afo_R003393 I 0.606
Aan_R014659 Calypte anna Aan_R014659 I 0.606
HOXC12 Oryctolagus cuniculus ENSOCUG00000001157 I 0.606
ENSSTOG00000019478 Ictidomys tridecemlineatus ENSSTOG00000019478 I 0.606
hoxc12a Takifugu rubripes ENSTRUG00000004280 I 0.606
HOXC12 Tursiops truncatus ENSTTRG00000004543 I 0.606
ENSXMAG00000000425 Xiphophorus maculatus ENSXMAG00000000425 I 0.606
HOXC12 Sus scrofa ENSSSCG00000000281 I 0.606
ENSOANG00000015091 Ornithorhynchus anatinus ENSOANG00000015091 I 0.606
HOXC12 Cavia porcellus ENSCPOG00000026314 I 0.606
HOXC12 Callithrix jacchus ENSCJAG00000018806 I 0.606
ENSCSAG00000005459 Chlorocebus sabaeus ENSCSAG00000005459 I 0.606
hoxd12a Danio rerio ENSDARG00000059263 I 0.606
hoxc12b Danio rerio ENSDARG00000103133 I 0.606
hoxc12a Danio rerio ENSDARG00000070352 I 0.606
HOXC12 Canis familiaris ENSCAFG00000006645 I 0.606
HOXC12 Bos taurus ENSBTAG00000000924 I 0.606
ENSAMEG00000000665 Ailuropoda melanoleuca ENSAMEG00000000665 I 0.606
ENSACAG00000010840 Anolis carolinensis ENSACAG00000010840 I 0.606
ENSAMXG00000006895 Astyanax mexicanus ENSAMXG00000006895 I 0.606
ENSAMXG00000009358 Astyanax mexicanus ENSAMXG00000009358 I 0.606
ENSAPLG00000007306 Anas platyrhynchos ENSAPLG00000007306 I 0.606
ENSAMXG00000024684 Astyanax mexicanus ENSAMXG00000024684 I 0.606
ENSOARG00000016352 Ovis aries ENSOARG00000016352 I 0.606
HOXC12 Equus caballus ENSECAG00000024893 I 0.606
HOXC12 Myotis lucifugus ENSMLUG00000026984 I 0.606
HOXC12 Microcebus murinus ENSMICG00000011709 I 0.606
HOXC12 Macaca mulatta ENSMMUG00000004541 I 0.606
ENSMPUG00000005886 Mustela putorius furo ENSMPUG00000005886 I 0.606
ENSNLEG00000017683 Nomascus leucogenys ENSNLEG00000017683 I 0.606
Hoxc12 Mus musculus ENSMUSG00000050328 D 0.606
HOXC12 Felis catus ENSFCAG00000023389 I 0.606
ENSLOCG00000006304 Lepisosteus oculatus ENSLOCG00000006304 I 0.606
ENSGALG00000026393 Gallus gallus ENSGALG00000026393 I 0.606
HOXC12 Homo sapiens ENSG00000123407 D 0.606
HOXC12 Loxodonta africana ENSLAFG00000024750 I 0.606
HOXC12 Gorilla gorilla ENSGGOG00000023684 I 0.606
ENSLACG00000016761 Latimeria chalumnae ENSLACG00000016761 I 0.606
CBN10640 Caenorhabditis brenneri CBN10640 I 0.599
ceh-58 Caenorhabditis elegans WBGene00007417 D 0.599
CBG02738 Caenorhabditis briggsae CBG02738 I 0.599