scaffold947-EXSNAP2012.14 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold947-EXSNAP2012.14 T236004_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.628 0.667
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.628 0.667
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.628 0.667
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.628 0.667
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.628 0.667
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.628 0.667
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.628 0.667
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.628 0.667
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.628 0.667
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.628 0.667
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.628 0.667
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.621 0.702
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.621 0.702
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.621 0.684
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.621 0.684
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.621 0.684
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.621 0.684
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.621 0.684
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.621 0.684
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.621 0.684
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.621 0.684
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.621 0.684
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.621 0.684
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.621 0.684
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.621 0.684
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.621 0.684
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.621 0.684
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.621 0.684
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.621 0.684
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.621 0.684
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.621 0.684
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.621 0.684
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.621 0.667
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.621 0.667
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.621 0.667
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.603 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold947-EXSNAP2012.14 Homeodomain 188 244

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RSKR_0001009500 Rhabditophanes kr3021 RSKR_0001009500 N 0.637
cad Drosophila melanogaster FBgn0000251 D 0.628
GA14567 Drosophila pseudoobscura FBgn0074595 I 0.628
GF15355 Drosophila ananassae FBgn0092380 I 0.628
GG21252 Drosophila erecta FBgn0113432 I 0.628
GH11619 Drosophila grimshawi FBgn0119099 I 0.628
GI17922 Drosophila mojavensis FBgn0140663 I 0.628
GL18519 Drosophila persimilis FBgn0156120 I 0.628
GM23369 Drosophila sechellia FBgn0178236 I 0.628
GD24280 Drosophila simulans FBgn0195628 I 0.628
GJ17694 Drosophila virilis FBgn0204863 I 0.628
GK14914 Drosophila willistoni FBgn0216919 I 0.628
GE12346 Drosophila yakuba FBgn0230096 I 0.628
LCUP004198 Lucilia cuprina LCUP004198 I 0.628
MDOA015506 Musca domestica MDOA015506 I 0.628
SINV16571 Solenopsis invicta SINV16571 I 0.625
cdx1b Gasterosteus aculeatus ENSGACG00000018004 I 0.623
YQE_00090 Dendroctonus ponderosae YQE_00090 I 0.623
YQE_00828 Dendroctonus ponderosae YQE_00828 I 0.623
YQE_03183 Dendroctonus ponderosae YQE_03183 I 0.623
YQE_04514 Dendroctonus ponderosae YQE_04514 I 0.623
CpipJ_CPIJ004813 Culex pipiens CpipJ_CPIJ004813 I 0.621
AAEL014557 Aedes aegypti AAEL014557 I 0.621
AGAP009646 Anopheles gambiae AGAP009646 I 0.621
BGIBMGA001180 Bombyx mori BGIBMGA001180 I 0.621
CGI_10023003 Crassostrea gigas CGI_10023003 I 0.621
CPIJ004813 Culex quinquefasciatus CPIJ004813 I 0.621
DAPPUDRAFT_347219 Daphnia pulex DAPPUDRAFT_347219 I 0.621
ENSACAG00000003334 Anolis carolinensis ENSACAG00000003334 I 0.621
ENSACAG00000015334 Anolis carolinensis ENSACAG00000015334 I 0.621
ENSAMEG00000002400 Ailuropoda melanoleuca ENSAMEG00000002400 I 0.621
ENSAMEG00000004954 Ailuropoda melanoleuca ENSAMEG00000004954 I 0.621
ENSAMXG00000000767 Astyanax mexicanus ENSAMXG00000000767 I 0.621
ENSAMXG00000016994 Astyanax mexicanus ENSAMXG00000016994 I 0.621
ENSAPLG00000013883 Anas platyrhynchos ENSAPLG00000013883 I 0.621
ENSBTAG00000001819 Bos taurus ENSBTAG00000001819 I 0.621
ENSBTAG00000012014 Bos taurus ENSBTAG00000012014 I 0.621
CDX2 Canis familiaris ENSCAFG00000006742 I 0.621
CDX1 Canis familiaris ENSCAFG00000018210 I 0.621
CDX2 Callithrix jacchus ENSCJAG00000019398 I 0.621
CDX1 Callithrix jacchus ENSCJAG00000021069 I 0.621
CDX2 Cavia porcellus ENSCPOG00000007276 I 0.621
ENSCPOG00000020353 Cavia porcellus ENSCPOG00000020353 I 0.621
ENSCSAG00000011659 Chlorocebus sabaeus ENSCSAG00000011659 I 0.621
ENSCSAG00000017976 Chlorocebus sabaeus ENSCSAG00000017976 I 0.621
cdx1b Danio rerio ENSDARG00000058999 I 0.621
CDX1 Dasypus novemcinctus ENSDNOG00000033702 I 0.621
CDX2 Dasypus novemcinctus ENSDNOG00000035260 I 0.621
Cdx2 Dipodomys ordii ENSDORG00000005495 I 0.621
CDX2 Equus caballus ENSECAG00000000707 I 0.621
ENSECAG00000024772 Equus caballus ENSECAG00000024772 I 0.621
CDX2 Erinaceus europaeus ENSEEUG00000005045 I 0.621
CDX2 Echinops telfairi ENSETEG00000018589 I 0.621
ENSFALG00000007944 Ficedula albicollis ENSFALG00000007944 I 0.621
CDX1 Felis catus ENSFCAG00000022723 I 0.621
CDX2 Felis catus ENSFCAG00000026699 I 0.621
CDX1 Homo sapiens ENSG00000113722 D 0.621
CDX2 Homo sapiens ENSG00000165556 D 0.621
cdx1b Gasterosteus aculeatus ENSGACG00000001779 I 0.621
CDX1 Gallus gallus ENSGALG00000005679 D 0.621
ENSGALG00000027764 Gallus gallus ENSGALG00000027764 I 0.621
ENSGGOG00000000106 Gorilla gorilla ENSGGOG00000000106 I 0.621
CDX2 Gorilla gorilla ENSGGOG00000005487 I 0.621
ENSGMOG00000013514 Gadus morhua ENSGMOG00000013514 I 0.621
ENSLACG00000014957 Latimeria chalumnae ENSLACG00000014957 I 0.621
CDX1 Loxodonta africana ENSLAFG00000025906 I 0.621
CDX2 Loxodonta africana ENSLAFG00000030146 I 0.621
ENSLOCG00000011109 Lepisosteus oculatus ENSLOCG00000011109 I 0.621
ENSMEUG00000003391 Macropus eugenii ENSMEUG00000003391 I 0.621
ENSMEUG00000007938 Macropus eugenii ENSMEUG00000007938 I 0.621
CDX1 Meleagris gallopavo ENSMGAG00000006839 I 0.621
ENSMICG00000000751 Microcebus murinus ENSMICG00000000751 I 0.621
ENSMLUG00000002563 Myotis lucifugus ENSMLUG00000002563 I 0.621
CDX1 Myotis lucifugus ENSMLUG00000008453 I 0.621
ENSMMUG00000011558 Macaca mulatta ENSMMUG00000011558 I 0.621
ENSMMUG00000016137 Macaca mulatta ENSMMUG00000016137 I 0.621
CDX2 Monodelphis domestica ENSMODG00000009021 I 0.621
CDX1 Monodelphis domestica ENSMODG00000009708 I 0.621
ENSMPUG00000005092 Mustela putorius furo ENSMPUG00000005092 I 0.621
ENSMPUG00000013978 Mustela putorius furo ENSMPUG00000013978 I 0.621
Cdx1 Mus musculus ENSMUSG00000024619 D 0.621
Cdx2 Mus musculus ENSMUSG00000029646 D 0.621
ENSNLEG00000010259 Nomascus leucogenys ENSNLEG00000010259 I 0.621
ENSOANG00000002295 Ornithorhynchus anatinus ENSOANG00000002295 I 0.621
ENSOARG00000006690 Ovis aries ENSOARG00000006690 I 0.621
ENSOARG00000012435 Ovis aries ENSOARG00000012435 I 0.621
CDX2 Oryctolagus cuniculus ENSOCUG00000004893 I 0.621
CDX1 Oryctolagus cuniculus ENSOCUG00000012479 I 0.621
CDX1 Otolemur garnettii ENSOGAG00000025120 I 0.621
CDX2 Otolemur garnettii ENSOGAG00000026117 I 0.621
ENSONIG00000013938 Oreochromis niloticus ENSONIG00000013938 I 0.621
CDX2 Ochotona princeps ENSOPRG00000003043 I 0.621
ENSOPRG00000008290 Ochotona princeps ENSOPRG00000008290 I 0.621
ENSORLG00000013083 Oryzias latipes ENSORLG00000013083 I 0.621
ENSPANG00000007091 Papio anubis ENSPANG00000007091 I 0.621
ENSPANG00000024013 Papio anubis ENSPANG00000024013 I 0.621
CDX1 Procavia capensis ENSPCAG00000008426 I 0.621
CDX2 Procavia capensis ENSPCAG00000010752 I 0.621
ENSPPYG00000005242 Pongo abelii ENSPPYG00000005242 I 0.621
ENSPPYG00000015944 Pongo abelii ENSPPYG00000015944 I 0.621
ENSPSIG00000012291 Pelodiscus sinensis ENSPSIG00000012291 I 0.621
ENSPSIG00000014400 Pelodiscus sinensis ENSPSIG00000014400 I 0.621
ENSPTRG00000005738 Pan troglodytes ENSPTRG00000005738 I 0.621
CDX1 Pan troglodytes ENSPTRG00000017411 I 0.621
CDX1 Pteropus vampyrus ENSPVAG00000001315 I 0.621
CDX2 Pteropus vampyrus ENSPVAG00000011522 I 0.621
Cdx2 Rattus norvegicus ENSRNOG00000032759 I 0.621
Cdx1 Rattus norvegicus ENSRNOG00000060334 I 0.621
ENSSHAG00000017862 Sarcophilus harrisii ENSSHAG00000017862 I 0.621
CDX2 Sus scrofa ENSSSCG00000009317 I 0.621
CDX1 Sus scrofa ENSSSCG00000014445 I 0.621
ENSSSCG00000023417 Sus scrofa ENSSSCG00000023417 I 0.621
ENSSTOG00000002918 Ictidomys tridecemlineatus ENSSTOG00000002918 I 0.621
ENSSTOG00000020585 Ictidomys tridecemlineatus ENSSTOG00000020585 I 0.621
ENSTBEG00000001197 Tupaia belangeri ENSTBEG00000001197 I 0.621
CDX2 Tupaia belangeri ENSTBEG00000006155 I 0.621
CDX1 Taeniopygia guttata ENSTGUG00000000941 I 0.621
CDX2 Taeniopygia guttata ENSTGUG00000011606 I 0.621
cdx1b Tetraodon nigroviridis ENSTNIG00000000119 I 0.621
cdx1b Takifugu rubripes ENSTRUG00000000997 I 0.621
CDX1 Tursiops truncatus ENSTTRG00000014646 I 0.621
ENSXMAG00000006641 Xiphophorus maculatus ENSXMAG00000006641 I 0.621
GB48966 Apis mellifera GB48966 I 0.621
HMEL016680 Heliconius melpomene HMEL016680 I 0.621
ISCW008954 Ixodes scapularis ISCW008954 I 0.621
PHUM055900 Pediculus humanus PHUM055900 I 0.621
RPRC000239 Rhodnius prolixus RPRC000239 I 0.621
SMAR009939 Strigamia maritima SMAR009939 I 0.621
SPU_024715 Strongylocentrotus purpuratus SPU_024715 I 0.621
Aan_R010632 Calypte anna Aan_R010632 I 0.621
Afo_R012074 Aptenodytes forsteri Afo_R012074 I 0.621
Alligator_sinensis_CCG015031.1 Alligator sinensis Alligator_sinensis_CCG015031.1 I 0.621
Brh_R003891 Buceros rhinoceros Brh_R003891 I 0.621
Cflo_06253--XP_001122398.1_APIME Camponotus floridanus Cflo_06253--XP_001122398.1_APIME I 0.621
Cmyd_10009948 Chelonia mydas Cmyd_10009948 I 0.621
ENSBTAP00000002378-D1 Bos grunniens ENSBTAP00000002378-D1 I 0.621
ENSBTAP00000015934-D1 Bos grunniens ENSBTAP00000015934-D1 I 0.621
ENSMMUP00000021225 Macaca fascicularis ENSMMUP00000021225 I 0.621
Gfo_R013213 Geospiza fortis Gfo_R013213 I 0.621
Myotis_brandtii_CDX2_10026424 Myotis brandtii Myotis_brandtii_CDX2_10026424 I 0.621
Ogr12616 Ophisaurus gracilis Ogr12616 I 0.621
Pvit_18553 Pogona vitticeps Pvit_18553 I 0.621
Tal_R011339 Tyto alba Tal_R011339 I 0.621
Q70LF3_ARTSF Artemia franciscana Q70LF3_ARTSF D 0.621
Sakowv30038072m.g Saccoglossus kowalevskii Sakowv30038072m.g I 0.621
AAA49747 Xenopus laevis AAA49747 I 0.621
CLEC012688 Cimex lectularius CLEC012688 I 0.621
SNAPOd2T00007607001 Oikopleura dioica SNAPOd2T00007607001 I 0.621
cdx2.S Xenopus laevis XB-GENE-17335658 I 0.621
cdx2 Xenopus tropicalis XB-GENE-483306 I 0.621
cdx1 Xenopus tropicalis XB-GENE-485396 I 0.621
cdx1.S Xenopus laevis XB-GENE-864834 I 0.621
cdx2.L Xenopus laevis XB-GENE-864967 I 0.621
AARA011392 Anopheles arabiensis AARA011392 I 0.621
AATE001065 Anopheles atroparvus AATE001065 I 0.621
ACHR000155 Anopheles christyi ACHR000155 I 0.621
ACOM032658 Anopheles coluzzii ACOM032658 I 0.621
ACUA017710 Anopheles culicifacies ACUA017710 I 0.621
ADIR004811 Anopheles dirus ADIR004811 I 0.621
AEPI007564 Anopheles epiroticus AEPI007564 I 0.621
AFAF013388 Anopheles farauti AFAF013388 I 0.621
AFUN005407 Anopheles funestus AFUN005407 I 0.621
AMAM013513 Anopheles maculatus AMAM013513 I 0.621
AMEC005579 Anopheles melas AMEC005579 I 0.621
AMEM004604 Anopheles merus AMEM004604 I 0.621
AMIN001504 Anopheles minimus AMIN001504 I 0.621
AQUA002910 Anopheles quadriannulatus AQUA002910 I 0.621
ENSCING00000007334 Ciona intestinalis ENSCING00000007334 I 0.620
ENSCSAVG00000007948 Ciona savignyi ENSCSAVG00000007948 I 0.620
e_gw.24.290.1 Branchiostoma floridae e_gw.24.290.1 I 0.620
e_gw.24.291.1 Branchiostoma floridae e_gw.24.291.1 I 0.620
ACYPI42801 Acyrthosiphon pisum ACYPI42801 I 0.619
ENSLACG00000016728 Latimeria chalumnae ENSLACG00000016728 I 0.619
ENSPFOG00000003207 Poecilia formosa ENSPFOG00000003207 I 0.618
ENSTNIG00000000021 Tetraodon nigroviridis ENSTNIG00000000021 I 0.618
ENSXMAG00000008549 Xiphophorus maculatus ENSXMAG00000008549 I 0.618
TC007576 Tribolium castaneum TC007576 I 0.618
TC007577 Tribolium castaneum TC007577 I 0.618
LDEC000035 Leptinotarsa decemlineata LDEC000035 I 0.618
ENSONIG00000013073 Oreochromis niloticus ENSONIG00000013073 I 0.617
cdx1b Takifugu rubripes ENSTRUG00000007928 I 0.617
LotgiG100635 Lottia gigantea LotgiG100635 I 0.617
LotgiG197335 Lottia gigantea LotgiG197335 I 0.616
ML319810a Mnemiopsis leidyi ML319810a N 0.616
NV14987 Nasonia vitripennis NV14987 I 0.616
tetur01g07680 Tetranychus urticae tetur01g07680 I 0.616
Minc16296 Meloidogyne incognita Minc16296 I 0.615
PTRK_0001336600 Parastrongyloides trichosuri PTRK_0001336600 I 0.615
SPAL_0001492700 Strongyloides papillosus SPAL_0001492700 I 0.615
SSTP_0000576200 Strongyloides stercoralis SSTP_0000576200 I 0.615
SVE_0397300 Strongyloides venezuelensis SVE_0397300 I 0.615
SMAR002790 Strigamia maritima SMAR002790 I 0.614
cdx1b Tetraodon nigroviridis ENSTNIG00000014224 I 0.610
RSKR_0001046900 Rhabditophanes kr3021 RSKR_0001046900 I 0.607
BXY_0901800 Bursaphelenchus xylophilus BXY_0901800 I 0.606
CBG17980 Caenorhabditis briggsae CBG17980 I 0.603
CBN10543 Caenorhabditis brenneri CBN10543 I 0.603
CJA02391 Caenorhabditis japonica CJA02391 I 0.603
CRE20227 Caenorhabditis remanei CRE20227 I 0.603
pal-1 Caenorhabditis elegans WBGene00003912 D 0.603
VSX2 Sus scrofa ENSSSCG00000002363 I 0.602
HCOI01745700 Haemonchus contortus HCOI01745700 I 0.602
Ocbimv22023837m.g Octopus bimaculoides Ocbimv22023837m.g I 0.600