Brh_R006623 (Buceros rhinoceros)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		Brh_R006623 T237693_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX3
M00358_2.00 		Homo sapiens
NRTNNNN
NNNNAYN		 PBM
Barrera et al.(2016)
PAX3_REF 		0.981 0.981
PAX3
M03297_2.00 		Homo sapiens
TAATYRATTA
TAATYRATTA		 SELEX
Jolma et al.(2013)
PAX3_1 		0.981 0.981
PAX3
M03885_2.00 		Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN		 SELEX
Nitta et al.(2015)
PAX3_1 		0.981 0.981
PAX3
M03886_2.00 		Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY		 SELEX
Nitta et al.(2015)
PAX3_2 		0.981 0.981
PAX3
M05438_2.00 		Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1 		0.981 0.981
PAX3
M05439_2.00 		Homo sapiens
NDAATCRATTMN
NKAATYGATTHN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2 		0.981 0.981
PAX3
M05440_2.00 		Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3 		0.981 0.981
PAX3
M09585_2.00 		Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW		 Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063 		0.981 0.981
PAX3
M10816_2.00 		Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA		 Transfac
Matys et al.(2006)
V$PAX3_01 		0.981 0.981
PAX3
M10817_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX3_B 		0.981 0.981
PAX3
M00352_2.00 		Homo sapiens
VNTAATYR
YRATTANB		 PBM
Barrera et al.(2016)
PAX3_G48R 		0.981 0.981
PAX3
M00353_2.00 		Homo sapiens
NNNNRTNNN
NNNAYNNNN		 PBM
Barrera et al.(2016)
PAX3_N47H 		0.981 0.981
PAX3
M00354_2.00 		Homo sapiens
NNNRYNN
NNRYNNN		 PBM
Barrera et al.(2016)
PAX3_N47K 		0.981 0.981
PAX3
M00355_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_P50L 		0.981 0.981
PAX3
M00357_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_R56L 		0.981 0.981
PAX3
M00359_2.00 		Homo sapiens
NTAATYRV
BYRATTAN		 PBM
Barrera et al.(2016)
PAX3_Y90H 		0.981 0.981
PAX3
M05441_2.00 		Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1 		0.981 0.981
PAX3
M05442_2.00 		Homo sapiens
NWAATCRATTAN
NTAATYGATTWN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2 		0.981 0.981
PAX3
M05443_2.00 		Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3 		0.981 0.981
PAX3
M00356_2.00 		Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN		 PBM
Barrera et al.(2016)
PAX3_R270C 		0.972 0.972
Pax7
M00541_2.00 		Mus musculus
NNVATTWN
NWAATBNN		 PBM
Berger et al.(2008)
Pax7_3783 		0.934 0.934
PAX7
M03292_2.00 		Homo sapiens
WAATYRATTA
TAATYRATTW		 SELEX
Jolma et al.(2013)
PAX7_1 		0.934 0.934
PAX7
M03293_2.00 		Homo sapiens
TAATYGATTA
TAATCRATTA		 SELEX
Jolma et al.(2013)
PAX7_2 		0.934 0.934
PAX7
M05416_2.00 		Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1 		0.934 0.934
PAX7
M05417_2.00 		Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2 		0.934 0.934
PAX7
M05418_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3 		0.934 0.934
PAX7
M05422_2.00 		Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1 		0.934 0.934
PAX7
M05423_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2 		0.934 0.934
PAX7
M05424_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3 		0.934 0.934
PAX7
M05874_2.00 		Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT		 SMiLE-seq
Isakova et al.(2017)
PAX7 		0.934 0.934
Pax7
M09586_2.00 		Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1 		0.934 0.934
Pax7
M09587_2.00 		Mus musculus
DTAATYDGATTA
TAATCHRATTAH		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2 		0.934 0.934
Pax7
M09588_2.00 		Mus musculus
TAATTGATTW
WAATCAATTA		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3 		0.934 0.934
PAX7
M05419_2.00 		Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1 		0.934 0.934
PAX7
M05420_2.00 		Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2 		0.934 0.934
PAX7
M05421_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3 		0.934 0.934
PAX7
M05425_2.00 		Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1 		0.934 0.934
PAX7
M05426_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2 		0.934 0.934
PAX7
M05427_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3 		0.934 0.934
prd
M03894_2.00 		Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB		 SELEX
Nitta et al.(2015)
prd_1 		0.764 0.764
prd
M03895_2.00 		Drosophila melanogaster
NRATCRATYN
NRATYGATYN		 SELEX
Nitta et al.(2015)
prd_2 		0.764 0.764
prd
M06555_2.00 		Drosophila melanogaster
HSWAACNGH
DCNGTTWSD		 B1H
Mathelier et al.(2014)
MA0239.1 		0.764 0.764
prd
M09684_2.00 		Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD		 Misc
Kulakovskiy et al.(2009)
prd 		0.764 0.764
prd
M10818_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$PRD_Q6 		0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R006623 Paired box 1 49
Brh_R006623 Homeodomain 108 164

Links

Other Homeodomain,Paired box family TFs
Other Buceros rhinoceros TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAX3 Anolis carolinensis ENSACAG00000004981 I 1.000
Pvit_18803 Pogona vitticeps Pvit_18803 I 1.000
ENSPSIG00000005535 Pelodiscus sinensis ENSPSIG00000005535 I 1.000
PAX3 Tupaia belangeri ENSTBEG00000010268 I 0.981
PAX3 Loxodonta africana ENSLAFG00000008041 I 0.981
ENSLACG00000006342 Latimeria chalumnae ENSLACG00000006342 I 0.981
ENSMEUG00000013628 Macropus eugenii ENSMEUG00000013628 I 0.981
PAX3 Gorilla gorilla ENSGGOG00000015636 I 0.981
ENSPPYG00000013219 Pongo abelii ENSPPYG00000013219 I 0.981
PAX3 Homo sapiens ENSG00000135903 D 0.981
PAX3 Microcebus murinus ENSMICG00000000336 I 0.981
ENSSHAG00000016542 Sarcophilus harrisii ENSSHAG00000016542 I 0.981
PAX3 Macaca mulatta ENSMMUG00000020409 I 0.981
ENSOARG00000020289 Ovis aries ENSOARG00000020289 I 0.981
PAX3 Oryctolagus cuniculus ENSOCUG00000017507 I 0.981
PAX3 Otolemur garnettii ENSOGAG00000001304 I 0.981
ENSPANG00000008818 Papio anubis ENSPANG00000008818 I 0.981
ENSNLEG00000009611 Nomascus leucogenys ENSNLEG00000009611 I 0.981
Pax3 Mus musculus ENSMUSG00000004872 I 0.981
PAX3 Equus caballus ENSECAG00000014549 I 0.981
PAX3 Monodelphis domestica ENSMODG00000021190 I 0.981
ENSMPUG00000016673 Mustela putorius furo ENSMPUG00000016673 I 0.981
PAX3 Myotis lucifugus ENSMLUG00000014155 I 0.981
PAX3 Felis catus ENSFCAG00000018967 I 0.981
PAX3 Canis familiaris ENSCAFG00000016041 I 0.981
ENSCSAG00000007841 Chlorocebus sabaeus ENSCSAG00000007841 I 0.981
ENSSTOG00000008650 Ictidomys tridecemlineatus ENSSTOG00000008650 I 0.981
PAX3 Callithrix jacchus ENSCJAG00000012088 I 0.981
PAX3 Bos taurus ENSBTAG00000009950 I 0.981
ENSAMEG00000007444 Ailuropoda melanoleuca ENSAMEG00000007444 I 0.981
Pax3 Rattus norvegicus ENSRNOG00000013670 I 0.981
ENSP00000375921 Macaca fascicularis ENSP00000375921 I 0.981
ENSBTAP00000013131-D1 Bos grunniens ENSBTAP00000013131-D1 I 0.981
PAX3 Pan troglodytes ENSPTRG00000012969 I 0.981
PAX3 Cavia porcellus ENSCPOG00000006276 I 0.981
PAX3 Dasypus novemcinctus ENSDNOG00000001871 I 0.972
ENSLOCG00000004189 Lepisosteus oculatus ENSLOCG00000004189 I 0.962
pax3a Danio rerio ENSDARG00000010192 I 0.962
PAX3 Pteropus vampyrus ENSPVAG00000007498 I 0.954
PAX3 Tetraodon nigroviridis ENSTNIG00000014313 I 0.953
ENSPFOG00000013988 Poecilia formosa ENSPFOG00000013988 I 0.943
ENSGMOG00000001549 Gadus morhua ENSGMOG00000001549 I 0.943
pax7b Danio rerio ENSDARG00000070818 I 0.943
ENSONIG00000014283 Oreochromis niloticus ENSONIG00000014283 I 0.943
PAX7 Oryzias latipes ENSORLG00000004269 I 0.943
pax7a Danio rerio ENSDARG00000100398 I 0.943
pax7a Tetraodon nigroviridis ENSTNIG00000014797 I 0.943
ENSLOCG00000003864 Lepisosteus oculatus ENSLOCG00000003864 I 0.943
PAX7 Gasterosteus aculeatus ENSGACG00000001703 I 0.943
pax7a Takifugu rubripes ENSTRUG00000015245 I 0.943
ENSAMXG00000024811 Astyanax mexicanus ENSAMXG00000024811 I 0.943
ENSAMXG00000003799 Astyanax mexicanus ENSAMXG00000003799 I 0.943
ENSPANG00000015169 Papio anubis ENSPANG00000015169 I 0.934
pax7a Gasterosteus aculeatus ENSGACG00000012890 I 0.934
Gfo_R010293 Geospiza fortis Gfo_R010293 I 0.934
PAX7 Oryctolagus cuniculus ENSOCUG00000006146 I 0.934
ENSCSAG00000000870 Chlorocebus sabaeus ENSCSAG00000000870 I 0.934
ENSAPLG00000005016 Anas platyrhynchos ENSAPLG00000005016 I 0.934
ENSGMOG00000006159 Gadus morhua ENSGMOG00000006159 I 0.925
ENSONIG00000014632 Oreochromis niloticus ENSONIG00000014632 I 0.925
ENSFALG00000012312 Ficedula albicollis ENSFALG00000012312 I 0.922
ENSPFOG00000007769 Poecilia formosa ENSPFOG00000007769 I 0.915
ENSLACG00000019159 Latimeria chalumnae ENSLACG00000019159 I 0.915
PAX3 Tetraodon nigroviridis ENSTNIG00000015279 I 0.915
ENSOARG00000010587 Ovis aries ENSOARG00000010587 I 0.915
fgenesh2_kg.scaffold_211000002 Branchiostoma floridae fgenesh2_kg.scaffold_211000002 I 0.906
ENSXMAG00000012884 Xiphophorus maculatus ENSXMAG00000012884 I 0.906
PAX7 Ochotona princeps ENSOPRG00000007352 I 0.906
fgenesh2_kg.scaffold_259000002 Branchiostoma floridae fgenesh2_kg.scaffold_259000002 I 0.906
PAX3 Tursiops truncatus ENSTTRG00000000379 I 0.896
PAX3 Oryzias latipes ENSORLG00000009031 I 0.896
PAX3 Echinops telfairi ENSETEG00000006800 I 0.896
CGI_10026438 Crassostrea gigas CGI_10026438 I 0.896
ENSPFOG00000016934 Poecilia formosa ENSPFOG00000016934 I 0.887
PAX3 Sus scrofa ENSSSCG00000028418 I 0.877
Myotis_brandtii_Pax3_10032963 Myotis brandtii Myotis_brandtii_Pax3_10032963 I 0.868
ENSCING00000005904 Ciona intestinalis ENSCING00000005904 I 0.821
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I 0.821
ENSTBEG00000000512 Tupaia belangeri ENSTBEG00000000512 I 0.821
CLEC002253 Cimex lectularius CLEC002253 I 0.821
PPAI006228 Phlebotomus papatasi PPAI006228 I 0.802
PHUM375940 Pediculus humanus PHUM375940 I 0.802
Cflo_07008--XP_394847.3_APIME Camponotus floridanus Cflo_07008--XP_394847.3_APIME I 0.792
Hsal_08388--XP_394847.3_APIME Harpegnathos saltator Hsal_08388--XP_394847.3_APIME I 0.783
ACYPI004907 Acyrthosiphon pisum ACYPI004907 I 0.783
ACYPI002777 Acyrthosiphon pisum ACYPI002777 I 0.783
tetur29g00530 Tetranychus urticae tetur29g00530 I 0.783
ENSPSIG00000006817 Pelodiscus sinensis ENSPSIG00000006817 I 0.783
ENSTSYG00000009638 Tarsius syrichta ENSTSYG00000009638 I 0.783
GF23439 Drosophila ananassae FBgn0100433 I 0.774
Hsal_04609--XP_394847.3_APIME Harpegnathos saltator Hsal_04609--XP_394847.3_APIME I 0.774
Cflo_06472--XP_394847.3_APIME Camponotus floridanus Cflo_06472--XP_394847.3_APIME I 0.774
BGIBMGA009025 Bombyx mori BGIBMGA009025 I 0.774
GJ23973 Drosophila virilis FBgn0211060 I 0.764
GH10195 Drosophila grimshawi FBgn0117676 I 0.764
MCINX015565 Melitaea cinxia MCINX015565 I 0.756
GA19807 Drosophila pseudoobscura FBgn0079803 I 0.755
GB43792 Apis mellifera GB43792 I 0.755
ADIR009744 Anopheles dirus ADIR009744 I 0.745
MDOA008527 Musca domestica MDOA008527 I 0.745
pax3 Xenopus tropicalis XB-GENE-482740 I 0.745
AALB001247 Anopheles albimanus AALB001247 I 0.745
ACUA004518 Anopheles culicifacies ACUA004518 I 0.745
ADAC005776 Anopheles darlingi ADAC005776 I 0.745
AQUA006728 Anopheles quadriannulatus AQUA006728 I 0.745
TC006788 Tribolium castaneum TC006788 I 0.745
ACHR003306 Anopheles christyi ACHR003306 I 0.745
HelroG185509 Helobdella robusta HelroG185509 I 0.745
AARA005847 Anopheles arabiensis AARA005847 I 0.745
AMAM004970 Anopheles maculatus AMAM004970 I 0.736
ASIS005037 Anopheles sinensis ASIS005037 I 0.736
CPIJ006496 Culex quinquefasciatus CPIJ006496 I 0.736
CpipJ_CPIJ006496 Culex pipiens CpipJ_CPIJ006496 I 0.736
ENSGMOG00000013066 Gadus morhua ENSGMOG00000013066 I 0.736
GB43794 Apis mellifera GB43794 I 0.717
AGAP010359 Anopheles gambiae AGAP010359 I 0.717
GJ21339 Drosophila virilis FBgn0208469 I 0.708
Aan_R010823 Calypte anna Aan_R010823 I 0.707