Bra030341 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra030341 T239874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.349 0.427
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.343 0.415
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.343 0.415
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.320 0.415
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.320 0.415
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030341.1-P HSF 1 89

Links

Other HSF family TFs
Other Brassica rapa TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g145450 Brassica oleracea Bo4g145450 I 0.449
Bo4g139200 Brassica oleracea Bo4g139200 I 0.358
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.358
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.357
MDP0000126826 Malus domestica MDP0000126826 I 0.356
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.356
Bo7g106320 Brassica oleracea Bo7g106320 I 0.355
Bra012571 Brassica rapa Bra012571 I 0.355
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.355
PGSC0003DMG400017484 Solanum tuberosum PGSC0003DMG400017484 I 0.354
Solyc09g059520.2 Solanum lycopersicum Solyc09g059520.2 I 0.354
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.352
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.352
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.351
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.350
HSFA4A Arabidopsis thaliana AT4G18880 D 0.349
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.349
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.349
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.349
Bra025635 Brassica rapa Bra025635 I 0.349
Bra013358 Brassica rapa Bra013358 I 0.349
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.349
Bo1g020010 Brassica oleracea Bo1g020010 I 0.349
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.349
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.348
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.348
Bo4g139630 Brassica oleracea Bo4g139630 I 0.348
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.348
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.348
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.348
Pavir.Ia00087 Panicum virgatum Pavir.Ia00087 I 0.347
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.347
Bra025608 Brassica rapa Bra025608 I 0.347
Pavir.Ib04475 Panicum virgatum Pavir.Ib04475 I 0.347
GRMZM2G384339 Zea mays GRMZM2G384339 I 0.347
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.347
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.347
Sb01g000730 Sorghum bicolor Sb01g000730 I 0.347
Si035526m.g Setaria italica Si035526m.g I 0.347
Bo3g157380 Brassica oleracea Bo3g157380 I 0.347
Gorai.004G257000 Gossypium raimondii Gorai.004G257000 I 0.346
Bra001071 Brassica rapa Bra001071 I 0.346
LPERR03G35390 Leersia perrieri LPERR03G35390 I 0.345
OPUNC03G38490 Oryza punctata OPUNC03G38490 I 0.345
PGSC0003DMG400027036 Solanum tuberosum PGSC0003DMG400027036 I 0.345
mgf006143m Mimulus guttatus mgf006143m I 0.345
HSFA1 Oryza sativa OS03G0854500 I 0.345
ORGLA03G0383200 Oryza glaberrima ORGLA03G0383200 I 0.345
OGLUM03G41290 Oryza glumaepatula OGLUM03G41290 I 0.345
OMERI03G38170 Oryza meridionalis OMERI03G38170 I 0.345
OBART03G41440 Oryza barthii OBART03G41440 I 0.345
ONIVA03G43540 Oryza nivara ONIVA03G43540 I 0.345
Bo3g055950 Brassica oleracea Bo3g055950 I 0.345
Bra025606 Brassica rapa Bra025606 I 0.344
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.344
TCM_029630 Theobroma cacao TCM_029630 I 0.344
VIT_16s0039g01840 Vitis vinifera VIT_16s0039g01840 I 0.344
LPERR01G26480 Leersia perrieri LPERR01G26480 I 0.344
SapurV1A.0182s0110 Salix purpurea SapurV1A.0182s0110 I 0.344
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.344
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.344
HSFA1E Arabidopsis thaliana AT3G02990 D 0.343
mgf006947m Mimulus guttatus mgf006947m I 0.343
Bra032023 Brassica rapa Bra032023 I 0.343
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I 0.343
Carubv10013628m.g Capsella rubella Carubv10013628m.g I 0.343
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I 0.343
GLYMA16G13400 Glycine max GLYMA16G13400 I 0.343
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I 0.343
Ca_00428 Cicer arietinum Ca_00428 I 0.343
MDP0000156337 Malus domestica MDP0000156337 I 0.343
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.342
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.342
GLYMA11G01190 Glycine max GLYMA11G01190 I 0.342
Bo5g150300 Brassica oleracea Bo5g150300 I 0.341
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.341
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.341
Solyc06g072750.2 Solanum lycopersicum Solyc06g072750.2 I 0.341
PGSC0003DMG400014811 Solanum tuberosum PGSC0003DMG400014811 I 0.340
Solyc08g076590.2 Solanum lycopersicum Solyc08g076590.2 I 0.340
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.340
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.339
PK03562.1 Cannabis sativa PK03562.1 I 0.338
AT-HSFA4C Arabidopsis lyrata fgenesh2_kg.8__230__AT5G45710.1 I 0.338
Bostr.8819s0096 Boechera stricta Bostr.8819s0096 I 0.338
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.338
Pm010169 Prunus mume Pm010169 I 0.337
Bo5g048950 Brassica oleracea Bo5g048950 I 0.336
Bo9g062710 Brassica oleracea Bo9g062710 I 0.336
Bra017595 Brassica rapa Bra017595 I 0.336
VIT_12s0028g01410 Vitis vinifera VIT_12s0028g01410 I 0.336
Lus10005925.g Linum usitatissimum Lus10005925.g I 0.336
Bra023258 Brassica rapa Bra023258 I 0.336
OB01G39790 Oryza brachyantha OB01G39790 I 0.335
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I 0.335
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.335
GLYMA01G44330 Glycine max GLYMA01G44330 I 0.335
Gorai.003G053300 Gossypium raimondii Gorai.003G053300 I 0.335
GLYMA15G09280 Glycine max GLYMA15G09280 I 0.335
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I 0.335
Solyc08g005170.2 Solanum lycopersicum Solyc08g005170.2 I 0.334
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.334
Pm023178 Prunus mume Pm023178 I 0.334
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.334
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.334
OPUNC01G15930 Oryza punctata OPUNC01G15930 I 0.334
PGSC0003DMG400017846 Solanum tuberosum PGSC0003DMG400017846 I 0.334
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.334
Lus10040911.g Linum usitatissimum Lus10040911.g I 0.334
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.334
ATHSFA1D Arabidopsis lyrata fgenesh2_kg.1__3374__AT1G32330.1 I 0.334
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.333
Bra021381 Brassica rapa Bra021381 I 0.333
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.333
Pm005887 Prunus mume Pm005887 I 0.333
gw1.42.207.1 Physcomitrella patens gw1.42.207.1 I 0.333
Bo1g155010 Brassica oleracea Bo1g155010 I 0.333
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.333
Aquca_005_00532 Aquilegia coerulea Aquca_005_00532 I 0.332
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.332
GLYMA09G33920 Glycine max GLYMA09G33920 I 0.332
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.332
PGSC0003DMG400004662 Solanum tuberosum PGSC0003DMG400004662 I 0.332
cassava44108.valid.m1 Manihot esculenta cassava44108.valid.m1 I 0.331
cassava44107.valid.m1 Manihot esculenta cassava44107.valid.m1 I 0.331
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.331
Lus10040091.g Linum usitatissimum Lus10040091.g I 0.331
Lus10030956.g Linum usitatissimum Lus10030956.g I 0.331
Bostr.30275s0239 Boechera stricta Bostr.30275s0239 I 0.331
HSFA1A Arabidopsis thaliana AT4G17750 I 0.331
MTR_5g029680 Medicago truncatula MTR_5g029680 I 0.331
cassava7697.valid.m1 Manihot esculenta cassava7697.valid.m1 I 0.330
Carubv10026722m.g Capsella rubella Carubv10026722m.g I 0.330
gene13904-v1.0-hybrid Fragaria vesca gene13904-v1.0-hybrid I 0.330
Cagra.0796s0014 Capsella grandiflora Cagra.0796s0014 I 0.330
SapurV1A.1190s0030 Salix purpurea SapurV1A.1190s0030 I 0.330
Ca_11487 Cicer arietinum Ca_11487 I 0.330
AMTR_s00048p00075850 Amborella trichopoda AMTR_s00048p00075850 I 0.330
Eucgr.A01948 Eucalyptus grandis Eucgr.A01948 I 0.330
Aquca_039_00029 Aquilegia coerulea Aquca_039_00029 I 0.330
evm.TU.supercontig_90.16 Carica papaya evm.TU.supercontig_90.16 I 0.329
Lus10011065.g Linum usitatissimum Lus10011065.g I 0.329
HSFA1D Arabidopsis thaliana AT1G32330 I 0.329
30026.m001484 Ricinus communis 30026.m001484 I 0.329
Cla009875 Citrullus lanatus Cla009875 I 0.329
Cucsa.047180 Cucumis sativus Cucsa.047180 I 0.329
Aquca_020_00446 Aquilegia coerulea Aquca_020_00446 I 0.329
evm.TU.supercontig_157.44 Carica papaya evm.TU.supercontig_157.44 I 0.329
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.328
Bostr.3359s0126 Boechera stricta Bostr.3359s0126 I 0.328
Gorai.003G183900 Gossypium raimondii Gorai.003G183900 I 0.328
POPTR_0003s09370 Populus trichocarpa POPTR_0003s09370 I 0.328
Solyc12g098520.1 Solanum lycopersicum Solyc12g098520.1 I 0.328
TCM_016563 Theobroma cacao TCM_016563 I 0.328
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.328
Lus10000312.g Linum usitatissimum Lus10000312.g I 0.328
PK05866.1 Cannabis sativa PK05866.1 I 0.328
Ca_08627 Cicer arietinum Ca_08627 I 0.328
PRUPE_ppa004782mg Prunus persica PRUPE_ppa004782mg I 0.328
30054.m000802 Ricinus communis 30054.m000802 I 0.328
Cla008974 Citrullus lanatus Cla008974 I 0.328
Cucsa.321980 Cucumis sativus Cucsa.321980 I 0.328
Gorai.008G225200 Gossypium raimondii Gorai.008G225200 I 0.328
SapurV1A.0852s0050 Salix purpurea SapurV1A.0852s0050 I 0.328
Bra023584 Brassica rapa Bra023584 I 0.327
HSFA4C Arabidopsis thaliana AT5G45710 I 0.327
GLYMA01G01990 Glycine max GLYMA01G01990 I 0.327
mgf007059m Mimulus guttatus mgf007059m I 0.327
mgf011445m Mimulus guttatus mgf011445m I 0.327
Solyc07g055710.2 Solanum lycopersicum Solyc07g055710.2 I 0.327
Bo9g161770 Brassica oleracea Bo9g161770 I 0.326
Ciclev10015541m.g Citrus clementina Ciclev10015541m.g I 0.326
Bo9g151630 Brassica oleracea Bo9g151630 I 0.326
Bo00967s020 Brassica oleracea Bo00967s020 I 0.326
TCM_025482 Theobroma cacao TCM_025482 I 0.326
Bra008593 Brassica rapa Bra008593 I 0.326
Bra020988 Brassica rapa Bra020988 I 0.326
TCM_011279 Theobroma cacao TCM_011279 I 0.326
orange1.1g016378m.g Citrus sinensis orange1.1g016378m.g I 0.326
Gorai.001G012700 Gossypium raimondii Gorai.001G012700 I 0.326
Gorai.009G032300 Gossypium raimondii Gorai.009G032300 I 0.325
Lus10006618.g Linum usitatissimum Lus10006618.g I 0.325
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.325
Solyc03g097120.2 Solanum lycopersicum Solyc03g097120.2 I 0.325
ORGLA01G0253200 Oryza glaberrima ORGLA01G0253200 I 0.325
HSFA4B Oryza sativa OS01G0749300 I 0.325
PGSC0003DMG400003160 Solanum tuberosum PGSC0003DMG400003160 I 0.325
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.325
ONIVA01G35260 Oryza nivara ONIVA01G35260 I 0.325
OMERI01G28000 Oryza meridionalis OMERI01G28000 I 0.325
BGIOSGA004459 Oryza indica BGIOSGA004459 I 0.325
HSF3 Arabidopsis lyrata fgenesh2_kg.6__1675__AT5G16820.1 I 0.325
OBART01G30880 Oryza barthii OBART01G30880 I 0.325
OGLUM01G35030 Oryza glumaepatula OGLUM01G35030 I 0.325
SapurV1A.3884s0010 Salix purpurea SapurV1A.3884s0010 I 0.325
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.325
SapurV1A.0029s0230 Salix purpurea SapurV1A.0029s0230 I 0.325
Carubv10003259m.g Capsella rubella Carubv10003259m.g I 0.325
Cagra.0434s0049 Capsella grandiflora Cagra.0434s0049 I 0.325
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.325
orange1.1g010166m.g Citrus sinensis orange1.1g010166m.g I 0.324
Bo4g139270 Brassica oleracea Bo4g139270 N 0.324
PK09831.1 Cannabis sativa PK09831.1 I 0.324
Pm011227 Prunus mume Pm011227 I 0.324
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.324
PRUPE_ppa004559mg Prunus persica PRUPE_ppa004559mg I 0.324
mgf013331m Mimulus guttatus mgf013331m I 0.324
Bra040179 Brassica rapa Bra040179 I 0.323
Bo1g017810 Brassica oleracea Bo1g017810 I 0.323
Eucgr.H02675 Eucalyptus grandis Eucgr.H02675 I 0.323
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.323
Thhalv10013428m.g Eutrema salsugineum Thhalv10013428m.g I 0.323
Thhalv10020648m.g Eutrema salsugineum Thhalv10020648m.g I 0.323
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.323
Eucgr.C03056 Eucalyptus grandis Eucgr.C03056 I 0.323
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.322
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.322
GSMUA_Achr4G04500_001 Musa acuminata GSMUA_Achr4G04500_001 I 0.322
29968.m000635 Ricinus communis 29968.m000635 I 0.322
Thhalv10025116m.g Eutrema salsugineum Thhalv10025116m.g I 0.321
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.321
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.321
GSMUA_Achr6G31750_001 Musa acuminata GSMUA_Achr6G31750_001 I 0.321
Gorai.013G183500 Gossypium raimondii Gorai.013G183500 I 0.321
GSMUA_Achr4G17040_001 Musa acuminata GSMUA_Achr4G17040_001 I 0.321
TRIUR3_02308 Triticum urartu TRIUR3_02308 I 0.320
HSFA1B Arabidopsis thaliana AT5G16820 D 0.320
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.320
Thhalv10025090m.g Eutrema salsugineum Thhalv10025090m.g I 0.320
TRIUR3_08676 Triticum urartu TRIUR3_08676 I 0.320
Aquca_001_00047 Aquilegia coerulea Aquca_001_00047 I 0.320
Gorai.012G044200 Gossypium raimondii Gorai.012G044200 I 0.320
Thhalv10000950m.g Eutrema salsugineum Thhalv10000950m.g I 0.320
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I 0.320
Bra030021 Brassica rapa Bra030021 I 0.319
Carubv10008952m.g Capsella rubella Carubv10008952m.g I 0.319
Cagra.3957s0014 Capsella grandiflora Cagra.3957s0014 I 0.319
cassava18058.valid.m1 Manihot esculenta cassava18058.valid.m1 I 0.319
AMTR_s00013p00262410 Amborella trichopoda AMTR_s00013p00262410 I 0.318
Bra002882 Brassica rapa Bra002882 I 0.318
Cucsa.256700 Cucumis sativus Cucsa.256700 I 0.318
Cla021715 Citrullus lanatus Cla021715 I 0.318