CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra035800
(
Brassica rapa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bra035800
T245082_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra035800.1-P
LOB
625
715
QQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELTREL
Links
Other
LOB
family TFs
Other
Brassica rapa
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g109920
Brassica oleracea
Bo5g109920
N
1.000
Cagra.0316s0041
Capsella grandiflora
Cagra.0316s0041
N
0.934
Carubv10012910m.g
Capsella rubella
Carubv10012910m.g
N
0.921
Bo3g074810
Brassica oleracea
Bo3g074810
N
0.901
Thhalv10020002m.g
Eutrema salsugineum
Thhalv10020002m.g
N
0.901
APUM5
Arabidopsis thaliana
AT3G20250
N
0.888
APUM5
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3001929
N
0.888
SELMODRAFT_78497
Selaginella moellendorffii
SELMODRAFT_78497
N
0.725