CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr3.CM0135.10.nc
(
Lotus japonicus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
chr3.CM0135.10.nc
T247418_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr3.CM0135.10.nc
LOB
6
104
RCAACRSQRRRCPSDCIFSPYFPPQYPERFACVHRIYGCSNVGKMLQEIPHYLREQAANSLYFEAKCRIEDPIYGCVGILSKLYQQIHDAEIELAKIQT
Links
Other
LOB
family TFs
Other
Lotus japonicus
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_16884
Cicer arietinum
Ca_16884
N
0.818
GLYMA14G02440
Glycine max
GLYMA14G02440
N
0.788
MTR_5g093010
Medicago truncatula
MTR_5g093010
N
0.788
MTR_7g028905
Medicago truncatula
MTR_7g028905
N
0.758
GLYMA05G32320
Glycine max
GLYMA05G32320
N
0.737
cassava11118.m1
Manihot esculenta
cassava11118.m1
I
0.707