CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBN05962
(
Caenorhabditis brenneri
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
CBN05962
T248073_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
madf-4
M00683_2.00
Caenorhabditis elegans
NDNCGYANN
NNTRCGNHN
PBM
Narasimhan et al.(2015)
pTH9096
0.938
0.905
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN05962
MADF
22
106
LIDSVQRNPCVYNRYDPLHKMTDYKHGVWQNISLEIGYDGQPVELERKWKHMRDKYVRLRKQDKQKAPIKDTNKWYNYYQKMSFL
Links
Other
MADF
family TFs
Other
Caenorhabditis brenneri
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN22408
Caenorhabditis brenneri
CBN22408
I
0.971
CRE06058
Caenorhabditis remanei
CRE06058
I
0.938
madf-4
Caenorhabditis elegans
WBGene00011575
D
0.938
CBG19420
Caenorhabditis briggsae
CBG19420
I
0.935
CJA07373
Caenorhabditis japonica
CJA07373
I
0.883
CJA40670
Caenorhabditis japonica
CJA40670
I
0.883