HPBE_0002310201 (Heligmosomoides bakeri)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 HPBE_0002310201 T252063_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG08311
M02267_2.00 		Caenorhabditis briggsae
RCGCGGAM
KTCCGCGY		 PBM
Weirauch et al.(2014)
pTH9393 		0.930 0.654
madf-9
M02277_2.00 		Caenorhabditis elegans
VYGCGGAH
DTCCGCRB		 PBM
Weirauch et al.(2014)
pTH8333 		0.930 0.654
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HPBE_0002310201-mRNA-1 MADF 11 88

Links

Other MADF family TFs
Other Heligmosomoides bakeri TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000053701 Angiostrongylus costaricensis ACOC_0000053701 I 0.971
ANCDUO_20588 Ancylostoma duodenale ANCDUO_20588 I 0.971
ANCDUO_21217 Ancylostoma duodenale ANCDUO_21217 I 0.971
OESDEN_02601 Oesophagostomum dentatum OESDEN_02601 I 0.971
OESDEN_17440 Oesophagostomum dentatum OESDEN_17440 I 0.971
DICVIV_09254 Dictyocaulus viviparus DICVIV_09254 I 0.970
ANCCAN_19661 Ancylostoma caninum ANCCAN_19661 I 0.968
HCOI00362100 Haemonchus contortus HCOI00362100 I 0.967
HCOI01732900 Haemonchus contortus HCOI01732900 I 0.967
TELCIR_18230 Teladorsagia circumcincta TELCIR_18230 I 0.967
HPLM_0002104601 Haemonchus placei HPLM_0002104601 I 0.962
CGOC_0001115201 Cylicostephanus goldi CGOC_0001115201 I 0.948
CBG08311 Caenorhabditis briggsae CBG08311 D 0.930
CBN03210 Caenorhabditis brenneri CBN03210 I 0.930
CBN17693 Caenorhabditis brenneri CBN17693 I 0.930
CJA11982 Caenorhabditis japonica CJA11982 I 0.930
CRE11120 Caenorhabditis remanei CRE11120 I 0.930
madf-9 Caenorhabditis elegans WBGene00022608 D 0.930
NBR_0000280301 Nippostrongylus brasiliensis NBR_0000280301 I 0.902
scaffold190-EXSNAP2012.38 Pristionchus exspectatus scaffold190-EXSNAP2012.38 I 0.843