Al_scaffold_0002_596 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0002_596 T252782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL50
M10904_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G59810_01 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0002_596 MADS box 18 62

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL50 Arabidopsis thaliana AT1G59810 D 0.778
AGL49 Arabidopsis thaliana AT1G60040 I 0.773
fgenesh1_pg.C_scaffold_2000489 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000489 I 0.739
scaffold_200645.1 Arabidopsis lyrata scaffold_200645.1 I 0.717