AGL63 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G31140 T252843_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development. Over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL63
M06982_2.00		 Arabidopsis thaliana
TDCCAAAAWHGGMAA
TTKCCDWTTTTGGHA		 Dap-seq
OMalley et al.(2016)
AGL63_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G31140.1 MADS box 10 57
AT1G31140.2 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.15697s0422 Boechera stricta Bostr.15697s0422 I 0.854
Carubv10012265m.g Capsella rubella Carubv10012265m.g I 0.833
Cagra.1508s0081 Capsella grandiflora Cagra.1508s0081 I 0.833
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Thhalv10006419m.g Eutrema salsugineum Thhalv10006419m.g I 0.708
Bo5g065750 Brassica oleracea Bo5g065750 I 0.708