AT5G49420 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G49420 T252928_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G38620
M10931_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G38620_01 		0.958 0.958
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G49420.1 MADS box 15 66

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G38620 Arabidopsis thaliana AT5G38620 D 0.958
AGL83 Arabidopsis thaliana AT5G49490 I 0.917
Bostr.15774s0044 Boechera stricta Bostr.15774s0044 I 0.792
Carubv10028105m.g Capsella rubella Carubv10028105m.g N 0.729
AGL99 Arabidopsis thaliana AT5G04640 N 0.708
Bo8g011140 Brassica oleracea Bo8g011140 N 0.708
Bra014217 Brassica rapa Bra014217 N 0.708
Carubv10022197m.g Capsella rubella Carubv10022197m.g I 0.708