GLYMA12G13560 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA12G13560 T254194_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA12G13560.1 MADS box 3 42

Links

Other MADS box family TFs
Other Glycine max TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G26261 Glycine max GLYMA03G26261 I 1.000
GLYMA16G17450 Glycine max GLYMA16G17450 I 1.000
GLYMA18G33910 Glycine max GLYMA18G33910 N 0.975
GLYMA18G36263 Glycine max GLYMA18G36263 N 0.950
GLYMA15G23610 Glycine max GLYMA15G23610 N 0.927
F775_30609 Aegilops tauschii F775_30609 I 0.759
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.725
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.725
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.725
Ca_04909 Cicer arietinum Ca_04909 I 0.725
Cla021117 Citrullus lanatus Cla021117 I 0.725
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.725
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.725
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.725
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.700
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.700
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.700
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.700