CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_700339.1
(
Arabidopsis lyrata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
scaffold_700339.1
T256125_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_700339.1
MADS box
10
57
RINDRQQRNIAFAKRKNGLLKKAYELFILCNVPVALILFSPSGKLFVF
Links
Other
MADS box
family TFs
Other
Arabidopsis lyrata
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT4G37435
Arabidopsis thaliana
AT4G37435
N
0.979
Bra011763
Brassica rapa
Bra011763
N
0.812
Bostr.7867s1603
Boechera stricta
Bostr.7867s1603
N
0.792
Thhalv10027470m.g
Eutrema salsugineum
Thhalv10027470m.g
N
0.771