Si025315m.g (Setaria italica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Si025315m.g T256245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si025315m MADS box 12 59

Links

Other MADS box family TFs
Other Setaria italica TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G137510 Zea mays GRMZM2G137510 I 0.958
Sb08g015555 Sorghum bicolor Sb08g015555 I 0.917
Pavir.Cb00838 Panicum virgatum Pavir.Cb00838 I 0.917
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.780
LPERR04G04720 Leersia perrieri LPERR04G04720 I 0.771
OB04G15510 Oryza brachyantha OB04G15510 I 0.771
OB12G20680 Oryza brachyantha OB12G20680 I 0.771
OPUNC04G05760 Oryza punctata OPUNC04G05760 I 0.771
BGIOSGA016105 Oryza indica BGIOSGA016105 I 0.750
BGIOSGA016106 Oryza indica BGIOSGA016106 I 0.750
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.750
Bo1g040180 Brassica oleracea Bo1g040180 I 0.750
Bo7g110310 Brassica oleracea Bo7g110310 I 0.750
Bra013891 Brassica rapa Bra013891 I 0.750
F775_25533 Aegilops tauschii F775_25533 I 0.750
MLOC_4407 Hordeum vulgare MLOC_4407 I 0.750
OB08G23110 Oryza brachyantha OB08G23110 I 0.750
OBART04G07050 Oryza barthii OBART04G07050 I 0.750
OBART08G15610 Oryza barthii OBART08G15610 I 0.750
OGLUM04G06810 Oryza glumaepatula OGLUM04G06810 I 0.750
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.750
OLONG_009563 Oryza longistaminata OLONG_009563 I 0.750
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.750
ONIVA04G05310 Oryza nivara ONIVA04G05310 I 0.750
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.750
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.750
ORGLA04G0053100 Oryza glaberrima ORGLA04G0053100 I 0.750
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.750
ORUFI04G08040 Oryza rufipogon ORUFI04G08040 I 0.750
MADS25 Oryza sativa OS04G0304400 I 0.750
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 0.750
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 0.750
Traes_7AS_376CD50EA Triticum aestivum Traes_7AS_376CD50EA I 0.750
Traes_7BS_DC9822CEF Triticum aestivum Traes_7BS_DC9822CEF I 0.750
Traes_7DS_05F0F0B64 Triticum aestivum Traes_7DS_05F0F0B64 I 0.750
Traes_7DS_59CBF5647 Triticum aestivum Traes_7DS_59CBF5647 I 0.750
Traes_7DS_D9008CC09 Triticum aestivum Traes_7DS_D9008CC09 I 0.750
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 0.750
TRIUR3_17292 Triticum urartu TRIUR3_17292 I 0.750
mgf021543m Mimulus guttatus mgf021543m I 0.750
Bostr.7867s0353 Boechera stricta Bostr.7867s0353 I 0.750
Lus10029556.g Linum usitatissimum Lus10029556.g I 0.750
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.745
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.729
Bo7g116760 Brassica oleracea Bo7g116760 I 0.729
Bo8g050720 Brassica oleracea Bo8g050720 I 0.729
Bra017638 Brassica rapa Bra017638 I 0.729
BRADI4G06867 Brachypodium distachyon BRADI4G06867 I 0.729
GRMZM5G814279 Zea mays GRMZM5G814279 I 0.729
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I 0.729
GSMUA_Achr3G20280_001 Musa acuminata GSMUA_Achr3G20280_001 I 0.729
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.729
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.729
OPUNC12G11630 Oryza punctata OPUNC12G11630 I 0.729
MADS23 Oryza sativa OS08G0431900 I 0.729
PGSC0003DMG401024252 Solanum tuberosum PGSC0003DMG401024252 I 0.729
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.729
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.729
Si003917m.g Setaria italica Si003917m.g I 0.729
Si007641m.g Setaria italica Si007641m.g I 0.729
Solyc03g006830.2 Solanum lycopersicum Solyc03g006830.2 I 0.729
Traes_7AS_8123257BA Triticum aestivum Traes_7AS_8123257BA I 0.729
TRIUR3_09108 Triticum urartu TRIUR3_09108 I 0.729
cassava21331.m1 Manihot esculenta cassava21331.m1 I 0.729
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.729
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.729
Eucgr.K00190 Eucalyptus grandis Eucgr.K00190 I 0.729
Eucgr.K00192 Eucalyptus grandis Eucgr.K00192 I 0.729
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.729
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.729
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.729
Pavir.Ea01057 Panicum virgatum Pavir.Ea01057 I 0.729
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.729
Pavir.J07457 Panicum virgatum Pavir.J07457 I 0.729
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.729
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.729
Traes_7BS_9D42F9BEA Triticum aestivum Traes_7BS_9D42F9BEA I 0.724
OB11G21480 Oryza brachyantha OB11G21480 I 0.714
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.708
AMTR_s00046p00208680 Amborella trichopoda AMTR_s00046p00208680 I 0.708
AGL16 Arabidopsis thaliana AT3G57230 D 0.708
BGIOSGA021662 Oryza indica BGIOSGA021662 I 0.708
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.708
MADS56 Oryza indica BGIOSGA033356 I 0.708
BGIOSGA036149 Oryza indica BGIOSGA036149 I 0.708
Bo00946s010 Brassica oleracea Bo00946s010 I 0.708
Bo2g161560 Brassica oleracea Bo2g161560 I 0.708
Bo4g149800 Brassica oleracea Bo4g149800 I 0.708
Bo9g103660 Brassica oleracea Bo9g103660 I 0.708
Bra010465 Brassica rapa Bra010465 I 0.708
Bra011509 Brassica rapa Bra011509 I 0.708
Bra028282 Brassica rapa Bra028282 I 0.708
Bra029155 Brassica rapa Bra029155 I 0.708
Bra030228 Brassica rapa Bra030228 I 0.708
BRADI1G45807 Brachypodium distachyon BRADI1G45807 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
BRADI3G57017 Brachypodium distachyon BRADI3G57017 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.708
F775_08627 Aegilops tauschii F775_08627 I 0.708
F775_13452 Aegilops tauschii F775_13452 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
GLYMA02G38091 Glycine max GLYMA02G38091 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.708
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
GLYMA14G36221 Glycine max GLYMA14G36221 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.708
GRMZM2G052045 Zea mays GRMZM2G052045 I 0.708
GSMUA_Achr11G21480_001 Musa acuminata GSMUA_Achr11G21480_001 I 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.708
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.708
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
MAD55_ORYSJ Oryza sativa MAD55_ORYSJ D 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
OB02G38310 Oryza brachyantha OB02G38310 I 0.708
OB06G16920 Oryza brachyantha OB06G16920 I 0.708
OB06G17440 Oryza brachyantha OB06G17440 I 0.708
OB07G27140 Oryza brachyantha OB07G27140 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
OBART02G31280 Oryza barthii OBART02G31280 I 0.708
OBART06G14060 Oryza barthii OBART06G14060 I 0.708
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
OBART12G13000 Oryza barthii OBART12G13000 I 0.708
OGLUM02G31980 Oryza glumaepatula OGLUM02G31980 I 0.708
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.708
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
OGLUM12G14590 Oryza glumaepatula OGLUM12G14590 I 0.708
OLONG_004860 Oryza longistaminata OLONG_004860 I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.708
OLONG_028574 Oryza longistaminata OLONG_028574 I 0.708
OMERI02G30060 Oryza meridionalis OMERI02G30060 I 0.708
OMERI06G08590 Oryza meridionalis OMERI06G08590 I 0.708
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.708
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.708
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
OMERI12G08970 Oryza meridionalis OMERI12G08970 I 0.708
ONIVA02G34790 Oryza nivara ONIVA02G34790 I 0.708
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.708
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
ONIVA12G13220 Oryza nivara ONIVA12G13220 I 0.708
OPUNC02G29000 Oryza punctata OPUNC02G29000 I 0.708
OPUNC06G07080 Oryza punctata OPUNC06G07080 I 0.708
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.708
ORGLA02G0267800 Oryza glaberrima ORGLA02G0267800 I 0.708
ORGLA06G0069900 Oryza glaberrima ORGLA06G0069900 I 0.708
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
ORGLA12G0116000 Oryza glaberrima ORGLA12G0116000 I 0.708
ORUFI02G32980 Oryza rufipogon ORUFI02G32980 I 0.708
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
ORUFI12G14120 Oryza rufipogon ORUFI12G14120 I 0.708
MADS57 Oryza sativa OS02G0731200 I 0.708
OS06G0217300 Oryza sativa OS06G0217300 I 0.708
OS06G0347700 Oryza sativa OS06G0347700 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
MADS20 Oryza sativa OS12G0501700 I 0.708
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
POPTR_0005s19440 Populus trichocarpa POPTR_0005s19440 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
Q4U0F1_WHEAT Triticum aestivum Q4U0F1_WHEAT D 0.708
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.708
Sb10g007380 Sorghum bicolor Sb10g007380 I 0.708
Si014885m.g Setaria italica Si014885m.g I 0.708
Si015525m.g Setaria italica Si015525m.g I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
TCM_034549 Theobroma cacao TCM_034549 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
Traes_1AS_3232D5589 Triticum aestivum Traes_1AS_3232D5589 I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.708
Traes_5BS_BC15EF87A Triticum aestivum Traes_5BS_BC15EF87A I 0.708
Traes_6AL_B5D4C3A49 Triticum aestivum Traes_6AL_B5D4C3A49 I 0.708
Traes_6DL_D1C1DBD34 Triticum aestivum Traes_6DL_D1C1DBD34 I 0.708
Traes_7BS_F4CFCDF52 Triticum aestivum Traes_7BS_F4CFCDF52 I 0.708
TRIUR3_03219 Triticum urartu TRIUR3_03219 I 0.708
TRIUR3_08704 Triticum urartu TRIUR3_08704 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.708
Ca_14956 Cicer arietinum Ca_14956 I 0.708
Cla002388 Citrullus lanatus Cla002388 I 0.708
Cla006326 Citrullus lanatus Cla006326 I 0.708
Pm004349 Prunus mume Pm004349 I 0.708
29596.m000699 Ricinus communis 29596.m000699 I 0.708
30147.m014133 Ricinus communis 30147.m014133 I 0.708
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.708
Cucsa.115490 Cucumis sativus Cucsa.115490 I 0.708
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.708
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.708
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.708
Carubv10006544m.g Capsella rubella Carubv10006544m.g I 0.708
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.708
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.708
Eucgr.H04618 Eucalyptus grandis Eucgr.H04618 I 0.708
Eucgr.I02059 Eucalyptus grandis Eucgr.I02059 I 0.708
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.708
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.708
Eucgr.K00202 Eucalyptus grandis Eucgr.K00202 I 0.708
Eucgr.K00203 Eucalyptus grandis Eucgr.K00203 I 0.708
Eucgr.K00204 Eucalyptus grandis Eucgr.K00204 I 0.708
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.708
evm.TU.supercontig_177.14 Carica papaya evm.TU.supercontig_177.14 I 0.708
Gorai.001G090000 Gossypium raimondii Gorai.001G090000 I 0.708
Gorai.009G227500 Gossypium raimondii Gorai.009G227500 I 0.708
Gorai.010G032700 Gossypium raimondii Gorai.010G032700 I 0.708
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
MDP0000144597 Malus domestica MDP0000144597 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000234911 Malus domestica MDP0000234911 I 0.708
MDP0000475549 Malus domestica MDP0000475549 I 0.708
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.708
Pavir.Db01833 Panicum virgatum Pavir.Db01833 I 0.708
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.708
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700