Traes_1DS_A0312C264 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_1DS_A0312C264 T256521_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.729 0.729
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1DS_A0312C264.1 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_18161 Aegilops tauschii F775_18161 I 1.000
Traes_1AS_24511D656 Triticum aestivum Traes_1AS_24511D656 I 0.958
Traes_1BS_7366111C01 Triticum aestivum Traes_1BS_7366111C01 I 0.958
Traes_1BS_7366111C0 Triticum aestivum Traes_1BS_7366111C0 I 0.958
Traes_1AS_3232D5589 Triticum aestivum Traes_1AS_3232D5589 I 0.938
F775_08934 Aegilops tauschii F775_08934 I 0.917
Traes_1DS_F70AAB507 Triticum aestivum Traes_1DS_F70AAB507 I 0.917
F775_20565 Aegilops tauschii F775_20565 I 0.896
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.833
OBART06G14060 Oryza barthii OBART06G14060 I 0.833
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.833
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.833
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.833
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.833
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.833
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.833
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.833
OS06G0347700 Oryza sativa OS06G0347700 I 0.833
Traes_4AL_72A03AD23 Triticum aestivum Traes_4AL_72A03AD23 I 0.833
OB06G22200 Oryza brachyantha OB06G22200 I 0.812
Traes_7BL_F5B6736D0 Triticum aestivum Traes_7BL_F5B6736D0 I 0.812
Bo9g103660 Brassica oleracea Bo9g103660 I 0.771
Bra028282 Brassica rapa Bra028282 I 0.771
Bra029155 Brassica rapa Bra029155 I 0.771
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.771
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.750
Bo00946s010 Brassica oleracea Bo00946s010 I 0.750
OB04G15510 Oryza brachyantha OB04G15510 I 0.750
OBART08G15610 Oryza barthii OBART08G15610 I 0.750
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.750
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.750
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.750
OPUNC04G05760 Oryza punctata OPUNC04G05760 I 0.750
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.750
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.750
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.750
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.750
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.750
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.729
AGL72 Arabidopsis thaliana AT5G51860 I 0.729
AGL71 Arabidopsis thaliana AT5G51870 I 0.729
BGIOSGA016105 Oryza indica BGIOSGA016105 I 0.729
Bo1g040180 Brassica oleracea Bo1g040180 I 0.729
Bra013891 Brassica rapa Bra013891 I 0.729
Bra028283 Brassica rapa Bra028283 I 0.729
BRADI3G00730 Brachypodium distachyon BRADI3G00730 I 0.729
F775_05654 Aegilops tauschii F775_05654 I 0.729
F775_15097 Aegilops tauschii F775_15097 I 0.729
GRMZM2G152862 Zea mays GRMZM2G152862 I 0.729
LPERR04G04720 Leersia perrieri LPERR04G04720 I 0.729
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.729
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.729
MTR_4g093030 Medicago truncatula MTR_4g093030 I 0.729
OB08G23110 Oryza brachyantha OB08G23110 I 0.729
OBART04G07050 Oryza barthii OBART04G07050 I 0.729
OGLUM04G06810 Oryza glumaepatula OGLUM04G06810 I 0.729
OLONG_009563 Oryza longistaminata OLONG_009563 I 0.729
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.729
ONIVA04G05310 Oryza nivara ONIVA04G05310 I 0.729
ORGLA04G0053100 Oryza glaberrima ORGLA04G0053100 I 0.729
MADS23 Oryza sativa OS08G0431900 I 0.729
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.729
Q9AR49_MAIZE Zea mays Q9AR49_MAIZE D 0.729
Sb06g019040 Sorghum bicolor Sb06g019040 I 0.729
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I 0.729
Si023214m.g Setaria italica Si023214m.g I 0.729
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.729
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.729
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.729
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.729
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.729
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.729
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.729
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.729
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.729
Pavir.J00016 Panicum virgatum Pavir.J00016 I 0.729
Pavir.J33965 Panicum virgatum Pavir.J33965 I 0.729
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I 0.729
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.729
gene02453-v1.0-hybrid Fragaria vesca gene02453-v1.0-hybrid N 0.714
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
AGL16 Arabidopsis thaliana AT3G57230 D 0.708
BGIOSGA016106 Oryza indica BGIOSGA016106 I 0.708
Bo2g162920 Brassica oleracea Bo2g162920 I 0.708
Bo3g023570 Brassica oleracea Bo3g023570 I 0.708
Bo7g110310 Brassica oleracea Bo7g110310 I 0.708
Bo7g116760 Brassica oleracea Bo7g116760 I 0.708
Bra017638 Brassica rapa Bra017638 I 0.708
Bra029154 Brassica rapa Bra029154 I 0.708
Bra029281 Brassica rapa Bra029281 I 0.708
Bra035907 Brassica rapa Bra035907 I 0.708
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.708
BRADI5G12440 Brachypodium distachyon BRADI5G12440 I 0.708
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
F775_27066 Aegilops tauschii F775_27066 I 0.708
F775_30836 Aegilops tauschii F775_30836 I 0.708
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.708
GLYMA05G29595 Glycine max GLYMA05G29595 I 0.708
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.708
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
GLYMA08G12730 Glycine max GLYMA08G12730 I 0.708
GLYMA10G38541 Glycine max GLYMA10G38541 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
GRMZM2G005155 Zea mays GRMZM2G005155 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
GRMZM2G052045 Zea mays GRMZM2G052045 I 0.708
GRMZM2G135018 Zea mays GRMZM2G135018 I 0.708
GRMZM5G805387 Zea mays GRMZM5G805387 I 0.708
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.708
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.708
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.708
OB06G31860 Oryza brachyantha OB06G31860 I 0.708
ORUFI04G08040 Oryza rufipogon ORUFI04G08040 I 0.708
MADS25 Oryza sativa OS04G0304400 I 0.708
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.708
POPTR_0005s19440 Populus trichocarpa POPTR_0005s19440 I 0.708
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.708
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.708
Sb06g028420 Sorghum bicolor Sb06g028420 I 0.708
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
Traes_2AL_267502097 Triticum aestivum Traes_2AL_267502097 I 0.708
Traes_2BL_3E613DE21 Triticum aestivum Traes_2BL_3E613DE21 I 0.708
Traes_2DL_662837152 Triticum aestivum Traes_2DL_662837152 I 0.708
Traes_5DS_82FA431DB Triticum aestivum Traes_5DS_82FA431DB I 0.708
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.708
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.708
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.708
TRIUR3_19891 Triticum urartu TRIUR3_19891 I 0.708
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
Pm019404 Prunus mume Pm019404 I 0.708
Pm021962 Prunus mume Pm021962 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.708
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
Bostr.15774s0333 Boechera stricta Bostr.15774s0333 I 0.708
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.708
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.708
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.708
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.708
Carubv10026982m.g Capsella rubella Carubv10026982m.g I 0.708
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.708
Carubv10027529m.g Capsella rubella Carubv10027529m.g I 0.708
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000475549 Malus domestica MDP0000475549 I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.708
Pavir.Ga00461 Panicum virgatum Pavir.Ga00461 I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.708
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.708
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.702