CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0753s0004
(
Capsella grandiflora
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cagra.0753s0004
T257663_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0753s0004.1.p
MADS box
5
53
LIEDEAARKVFFNERKRGIIKKLSELSTLCGVKTCGVIYSPYNPELEAW
Links
Other
MADS box
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10001714m.g
Capsella rubella
Carubv10001714m.g
N
0.938
Carubv10020903m.g
Capsella rubella
Carubv10020903m.g
N
0.885
Cagra.1777s0039
Capsella grandiflora
Cagra.1777s0039
N
0.708