CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10006209m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10006209m.g
T257744_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10006209m
MADS box
12
63
KIQKKESRAVAFSQRRNGLYNKASQLCRLSGAEMAILTTPCSSSSHASFYSF
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1718s0014
Capsella grandiflora
Cagra.1718s0014
N
1.000
Bostr.0597s0065
Boechera stricta
Bostr.0597s0065
N
0.771
Carubv10022197m.g
Capsella rubella
Carubv10022197m.g
I
0.729
Carubv10021917m.g
Capsella rubella
Carubv10021917m.g
I
0.708