Pavir.Gb00606 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Gb00606 T258914_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00606.1.p MADS box 102 124
Pavir.Gb00606.2.p MADS box 91 113
Pavir.Gb00606.3.p MADS box 102 124
Pavir.Gb00606.4.p MADS box 91 113

Links

Other MADS box family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI05G05900 Oryza meridionalis OMERI05G05900 I 0.739
ONIVA05G07370 Oryza nivara ONIVA05G07370 I 0.739
OLONG_018464 Oryza longistaminata OLONG_018464 I 0.739
OGLUM05G06900 Oryza glumaepatula OGLUM05G06900 I 0.739
OBART05G06600 Oryza barthii OBART05G06600 I 0.739
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.739
OS05G0203800 Oryza sativa OS05G0203800 I 0.739
chr2.CM0099.100.nc Lotus japonicus chr2.CM0099.100.nc I 0.739
Ca_25684 Cicer arietinum Ca_25684 I 0.739
Solyc02g071730.2 Solanum lycopersicum Solyc02g071730.2 I 0.739
PGSC0003DMG400028442 Solanum tuberosum PGSC0003DMG400028442 I 0.739
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.739
MLOC_57700 Hordeum vulgare MLOC_57700 I 0.739
GLYMA02G45730 Glycine max GLYMA02G45730 I 0.739
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.739
BRADI2G06330 Brachypodium distachyon BRADI2G06330 I 0.739
Bra014552 Brassica rapa Bra014552 I 0.739
Bo4g108190 Brassica oleracea Bo4g108190 I 0.739
GLYMA14G03100 Glycine max GLYMA14G03100 I 0.739
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.739
GSMUA_Achr5G06590_001 Musa acuminata GSMUA_Achr5G06590_001 I 0.739
MLOC_5375 Hordeum vulgare MLOC_5375 I 0.739
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.739
GRMZM2G359952 Zea mays GRMZM2G359952 I 0.739
GRMZM2G010669 Zea mays GRMZM2G010669 I 0.739
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.739