CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J26173
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.J26173
T258957_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J26173.1.p
MADS box
10
54
LIPNRRVRADTFGKRKKGLKKKAEELSVLCGVDVALVVAAGDGGA
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb02360
Panicum virgatum
Pavir.Eb02360
N
0.860
Si003942m.g
Setaria italica
Si003942m.g
N
0.822
Sb03g013650
Sorghum bicolor
Sb03g013650
N
0.822
Sb02g037430
Sorghum bicolor
Sb02g037430
N
0.733
GRMZM2G337892
Zea mays
GRMZM2G337892
N
0.733
GRMZM2G306610
Zea mays
GRMZM2G306610
N
0.711