CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SETDB1
(
Homo sapiens
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01429 (MBD)
IPR001739
ENSG00000143379
T260166_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a histone methyltransferase which regulates histone methylation, gene silencing, and transcriptional repression. This gene has been identified as a target for treatment in Huntington Disease, given that gene silencing and transcription dysfunction likely play a role in the disease pathogenesis. Alternatively spliced transcript variants of this gene have been described.[provided by RefSeq, Jun 2011]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SETDB1
M11031_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SETDB1_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000271640
MBD
594
668
YRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDR
ENSP00000357965
MBD
594
668
YRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDR
ENSP00000432348
MBD
594
668
YRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDR
ENSP00000436148
MBD
595
636
YRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCL
Links
Other
MBD
family TFs
Other
Homo sapiens
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SETDB1
Otolemur garnettii
ENSOGAG00000010320
I
1.000
SETDB1
Ochotona princeps
ENSOPRG00000015349
I
1.000
ENSPANG00000020214
Papio anubis
ENSPANG00000020214
I
1.000
SETDB1
Procavia capensis
ENSPCAG00000002527
I
1.000
SETDB1
Oryctolagus cuniculus
ENSOCUG00000003642
I
1.000
ENSAMEG00000001160
Ailuropoda melanoleuca
ENSAMEG00000001160
I
1.000
SETDB1
Myotis lucifugus
ENSMLUG00000010486
I
1.000
SETDB1
Macaca mulatta
ENSMMUG00000023235
I
1.000
ENSMPUG00000004298
Mustela putorius furo
ENSMPUG00000004298
I
1.000
Setdb1
Mus musculus
ENSMUSG00000015697
I
1.000
ENSPPYG00000000887
Pongo abelii
ENSPPYG00000000887
I
1.000
SETDB1
Pan troglodytes
ENSPTRG00000001267
I
1.000
SETDB1
Vicugna pacos
ENSVPAG00000005440
I
1.000
ENSBTAP00000000107-D1
Bos grunniens
ENSBTAP00000000107-D1
I
1.000
ENSP00000357965
Macaca fascicularis
ENSP00000357965
I
1.000
Myotis_brandtii_SETDB1_10031834
Myotis brandtii
Myotis_brandtii_SETDB1_10031834
I
1.000
SETDB1
Tursiops truncatus
ENSTTRG00000006966
I
1.000
SETDB1
Tupaia belangeri
ENSTBEG00000009306
I
1.000
SETDB1
Pteropus vampyrus
ENSPVAG00000004355
I
1.000
SETDB1
Sus scrofa
ENSSSCG00000006645
I
1.000
ENSSTOG00000006770
Ictidomys tridecemlineatus
ENSSTOG00000006770
I
1.000
ENSMEUG00000006544
Macropus eugenii
ENSMEUG00000006544
I
1.000
ENSOARG00000020880
Ovis aries
ENSOARG00000020880
I
1.000
ENSCSAG00000018034
Chlorocebus sabaeus
ENSCSAG00000018034
I
1.000
SETDB1
Cavia porcellus
ENSCPOG00000001632
I
1.000
SETDB1
Callithrix jacchus
ENSCJAG00000006972
I
1.000
SETDB1
Felis catus
ENSFCAG00000009655
I
1.000
Setdb1
Dipodomys ordii
ENSDORG00000006830
I
1.000
SETDB1
Dasypus novemcinctus
ENSDNOG00000007754
I
1.000
SETDB1
Erinaceus europaeus
ENSEEUG00000015825
I
1.000
SETDB1
Equus caballus
ENSECAG00000023954
I
1.000
SETDB1
Choloepus hoffmanni
ENSCHOG00000004013
I
1.000
SETDB1
Canis familiaris
ENSCAFG00000023501
I
1.000
SETDB1
Loxodonta africana
ENSLAFG00000004006
I
1.000
SETDB1
Bos taurus
ENSBTAG00000000098
I
1.000
SETDB1
Gorilla gorilla
ENSGGOG00000016308
I
1.000
Setdb1
Rattus norvegicus
ENSRNOG00000021143
I
0.987
SETDB1
Monodelphis domestica
ENSMODG00000018821
I
0.973
ENSSHAG00000012701
Sarcophilus harrisii
ENSSHAG00000012701
I
0.973
ENSAPLG00000013908
Anas platyrhynchos
ENSAPLG00000013908
I
0.960
Cmyd_10007606
Chelonia mydas
Cmyd_10007606
I
0.952
Alligator_sinensis_CCG020665.1
Alligator sinensis
Alligator_sinensis_CCG020665.1
I
0.933
ENSPSIG00000008407
Pelodiscus sinensis
ENSPSIG00000008407
I
0.933
SETDB1
Meleagris gallopavo
ENSMGAG00000001018
I
0.933
SETDB1
Gallus gallus
ENSGALG00000024051
I
0.933
ENSGALG00000029138
Gallus gallus
ENSGALG00000029138
I
0.933
ENSLACG00000011159
Latimeria chalumnae
ENSLACG00000011159
I
0.920
ENSOANG00000028880
Ornithorhynchus anatinus
ENSOANG00000028880
I
0.914
Pvit_04977
Pogona vitticeps
Pvit_04977
I
0.907
setdb1.L
Xenopus laevis
XB-GENE-866480
I
0.907
SETDB1
Taeniopygia guttata
ENSTGUG00000004684
I
0.907
XP_002935515
Xenopus tropicalis
XP_002935515
I
0.907
XP_002935516
Xenopus tropicalis
XP_002935516
I
0.907
ENSMEUG00000000555
Macropus eugenii
ENSMEUG00000000555
I
0.893
ENSNLEG00000009996
Nomascus leucogenys
ENSNLEG00000009996
I
0.892
ENSONIG00000006454
Oreochromis niloticus
ENSONIG00000006454
I
0.857
ENSXMAG00000016600
Xiphophorus maculatus
ENSXMAG00000016600
I
0.857
setdb1b
Oryzias latipes
ENSORLG00000010602
I
0.857
setdb1b
Gasterosteus aculeatus
ENSGACG00000011675
I
0.857
ENSPFOG00000004429
Poecilia formosa
ENSPFOG00000004429
I
0.827
setdb1b
Takifugu rubripes
ENSTRUG00000014641
I
0.827
ENSPFOG00000004623
Poecilia formosa
ENSPFOG00000004623
I
0.827
ENSGMOG00000005993
Gadus morhua
ENSGMOG00000005993
I
0.827
setdb1b
Tetraodon nigroviridis
ENSTNIG00000008065
I
0.810
setdb1b
Danio rerio
ENSDARG00000099021
I
0.800
SETDB1
Microcebus murinus
ENSMICG00000000425
I
0.761