CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.0043s0010
(
Capsella grandiflora
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Cagra.0043s0010
T264602_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0043s0010.1.p
mTERF
92
437
LSLLRSYGFTKSQISSIVTIYPRLLILDAEKSIAPKLQSLKSRGASTTELTEIVSTVPKILGKRGHKGISVYYDFVKDIIEADKSSSDEKLCHSFPQGNKENKIRNISVLRELGVAQRLLFPLLISDSQPVCGKQRFEESLKKVVEMGFDPETSKFVEALRVIYRMSEKTIEEKVNVYKRLGFGVADVWGIFKKWPSFLSYSEKKITHAFETLMGCGLLKHEVLSLLKKHPKCICTSEQKIVNSIETFLGLGFTRDEFAMMIKRYPQCIDYTAETVKKKTEFIVRKMNWPLEALVSIPQVYGYSLEKRTAPRCNVIKTLMSKGLMGDGSETPPMSSVLTSTDQAFL
Links
Other
mTERF
family TFs
Other
Capsella grandiflora
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10020267m.g
Capsella rubella
Carubv10020267m.g
N
0.997
Bostr.22157s0170
Boechera stricta
Bostr.22157s0170
N
0.919
AT1G61960
Arabidopsis thaliana
AT1G61960
N
0.913
fgenesh1_pm.C_scaffold_2000223
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000223
N
0.907
Bostr.22157s0168
Boechera stricta
Bostr.22157s0168
N
0.723
Bostr.22157s0123
Boechera stricta
Bostr.22157s0123
I
0.721
AT1G62085
Arabidopsis thaliana
AT1G62085
N
0.714