CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10004187m.g
(
Eutrema salsugineum
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Thhalv10004187m.g
T265185_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G23930
M06996_2.00
Arabidopsis thaliana
HNYHDCMDYYDYMGCCGCCR
YGGCGGCKRHRRHKGHDRND
Dap-seq
OMalley et al.(2016)
AT5G23930_col_a
0.757
0.757
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10004187m
mTERF
93
429
LKLLRSYGFTDLQISSIIATYPRFLIENPENTLRAKLHLLKLNGASSSELTEIVTKVPKILGGRGHFSTTGYFDYVKEVLQDQGKSSKSPKGNQTNRARNVSVLRELGVPQRLLLNLLVSKAKPVCGKERFEGSVKKIVEMGFDPTSPKFVNALYVFYELSEKTLEQKVDAYKRLGFSVDEVWAIFKKWPYSLKYSEKKITQTFETLKRCGLTEEEVRTILKKYPECVGTSEEKIVNSFETFLGLGFRKDEFLMIIKRHPQCLGLAADTVKTKTEFLVKKMGWPLKAIASTPIVLGFSLEKFIYPRCNVIKALVSKGLIGGVPAISSVLTSSKDRFL
Links
Other
mTERF
family TFs
Other
Eutrema salsugineum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo7g097370
Brassica oleracea
Bo7g097370
I
0.799
Bra009715
Brassica rapa
Bra009715
I
0.783
Carubv10000909m.g
Capsella rubella
Carubv10000909m.g
I
0.780
Bostr.10199s0043
Boechera stricta
Bostr.10199s0043
I
0.777
fgenesh2_kg.6__2388__AT5G23930.1
Arabidopsis lyrata
fgenesh2_kg.6__2388__AT5G23930.1
I
0.773
Cagra.0086s0019
Capsella grandiflora
Cagra.0086s0019
I
0.770
AT5G23930
Arabidopsis thaliana
AT5G23930
D
0.757