Bra026635 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra026635 T268005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.739 0.681
e_gw1.362.4.1
M02341_2.00 		Physcomitrella patens
NNNRDATCNN
NNGATHYNNN		 PBM
Weirauch et al.(2014)
pTH8461 		0.725 0.830
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.720 0.830
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.720 0.830
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00 		Ostreococcus tauri
NNNDATCN
NGATHNNN		 PBM
Weirauch et al.(2014)
pTH9644 		0.699 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026635.1-P Myb 186 236

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g134560 Brassica oleracea Bo2g134560 I 0.870
SELMODRAFT_115021 Selaginella moellendorffii SELMODRAFT_115021 I 0.804
SELMODRAFT_440049 Selaginella moellendorffii SELMODRAFT_440049 I 0.804
Thhalv10004402m.g Eutrema salsugineum Thhalv10004402m.g I 0.796
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.785
RR21 Oryza indica BGIOSGA012149 I 0.778
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.778
F775_32153 Aegilops tauschii F775_32153 I 0.778
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.778
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.778
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.778
OB03G19140 Oryza brachyantha OB03G19140 I 0.778
OBART03G08950 Oryza barthii OBART03G08950 I 0.778
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.778
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.778
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.778
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.778
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.778
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.778
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.778
RR21 Oryza sativa OS03G0224200 I 0.778
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.778
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.778
Si034517m.g Setaria italica Si034517m.g I 0.778
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.778
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.778
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.778
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.778
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.778
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.778
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.778
mg021488m Mimulus guttatus mg021488m I 0.758
SELMODRAFT_187683 Selaginella moellendorffii SELMODRAFT_187683 I 0.746
SELMODRAFT_418787 Selaginella moellendorffii SELMODRAFT_418787 I 0.746
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I 0.740
MYBC1 Arabidopsis thaliana AT2G40970 I 0.739
AT3G10760 Arabidopsis thaliana AT3G10760 I 0.739
AT5G05090 Arabidopsis thaliana AT5G05090 D 0.739
BGIOSGA018058 Oryza indica BGIOSGA018058 I 0.739
Bo3g003150 Brassica oleracea Bo3g003150 I 0.739
Bo4g012890 Brassica oleracea Bo4g012890 I 0.739
Bo5g019990 Brassica oleracea Bo5g019990 I 0.739
Bo5g137150 Brassica oleracea Bo5g137150 I 0.739
Bo9g177390 Brassica oleracea Bo9g177390 I 0.739
Bra004593 Brassica rapa Bra004593 I 0.739
Bra005837 Brassica rapa Bra005837 I 0.739
Bra009087 Brassica rapa Bra009087 I 0.739
Bra029866 Brassica rapa Bra029866 I 0.739
Bra034144 Brassica rapa Bra034144 I 0.739
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I 0.739
GLYMA02G21820 Glycine max GLYMA02G21820 I 0.739
GLYMA03G27890 Glycine max GLYMA03G27890 I 0.739
GLYMA19G30700 Glycine max GLYMA19G30700 I 0.739
GRMZM2G398055 Zea mays GRMZM2G398055 I 0.739
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I 0.739
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I 0.739
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I 0.739
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I 0.739
LPERR05G13030 Leersia perrieri LPERR05G13030 I 0.739
MLOC_24056 Hordeum vulgare MLOC_24056 I 0.739
MTR_7g089010 Medicago truncatula MTR_7g089010 I 0.739
OMERI05G06680 Oryza meridionalis OMERI05G06680 I 0.739
ONIVA05G17050 Oryza nivara ONIVA05G17050 I 0.739
OPUNC05G14480 Oryza punctata OPUNC05G14480 I 0.739
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I 0.739
OS05G0412000 Oryza sativa OS05G0412000 I 0.739
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I 0.739
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I 0.739
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I 0.739
MYBC1 Arabidopsis lyrata scaffold_402901.1 I 0.739
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I 0.739
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I 0.739
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I 0.739
Ca_07144 Cicer arietinum Ca_07144 I 0.739
Cla012286 Citrullus lanatus Cla012286 I 0.739
Cla017714 Citrullus lanatus Cla017714 I 0.739
Pm031149 Prunus mume Pm031149 I 0.739
30180.m001019 Ricinus communis 30180.m001019 I 0.739
cassava20582.m1 Manihot esculenta cassava20582.m1 I 0.739
Cucsa.140020 Cucumis sativus Cucsa.140020 I 0.739
Cucsa.358530 Cucumis sativus Cucsa.358530 I 0.739
mgf014801m Mimulus guttatus mgf014801m I 0.739
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I 0.739
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I 0.739
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I 0.739
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I 0.739
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I 0.739
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I 0.739
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I 0.739
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I 0.739
Carubv10003130m.g Capsella rubella Carubv10003130m.g I 0.739
Carubv10014134m.g Capsella rubella Carubv10014134m.g I 0.739
Carubv10024859m.g Capsella rubella Carubv10024859m.g I 0.739
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I 0.739
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I 0.739
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I 0.739
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I 0.739
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I 0.739
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I 0.739
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I 0.739
Lus10010442.g Linum usitatissimum Lus10010442.g I 0.739
Lus10012102.g Linum usitatissimum Lus10012102.g I 0.739
Lus10027291.g Linum usitatissimum Lus10027291.g I 0.739
Lus10038996.g Linum usitatissimum Lus10038996.g I 0.739
MDP0000846313 Malus domestica MDP0000846313 I 0.739
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I 0.739
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I 0.739
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I 0.739
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I 0.739
PK23977.1 Cannabis sativa PK23977.1 I 0.739
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I 0.739
Sb09g020340 Sorghum bicolor Sb09g020340 I 0.736
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.725
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.725
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.725
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.725
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.725
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.725
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.725
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.725
SELMODRAFT_150746 Selaginella moellendorffii SELMODRAFT_150746 I 0.725
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.725
SELMODRAFT_442188 Selaginella moellendorffii SELMODRAFT_442188 I 0.725
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.725
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.725
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.725
TCM_021300 Theobroma cacao TCM_021300 I 0.725
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.725
Ca_02989 Cicer arietinum Ca_02989 I 0.725
Cla009424 Citrullus lanatus Cla009424 I 0.725
Cla022101 Citrullus lanatus Cla022101 I 0.725
29889.m003245 Ricinus communis 29889.m003245 I 0.725
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.725
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.725
e_gw1.362.4.1 Physcomitrella patens e_gw1.362.4.1 D 0.725
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.725
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.725
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.725
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.725
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.725
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.725
MDP0000224740 Malus domestica MDP0000224740 I 0.725
MDP0000290818 Malus domestica MDP0000290818 I 0.725
PK26059.1 Cannabis sativa PK26059.1 I 0.725
TCM_045790 Theobroma cacao TCM_045790 I 0.721
ARR14 Arabidopsis thaliana AT2G01760 D 0.720
ARR14 Arabidopsis lyrata scaffold_500093.1 I 0.720
mgf010113m Mimulus guttatus mgf010113m I 0.720
mgf012203m Mimulus guttatus mgf012203m I 0.720
Cagra.2235s0034 Capsella grandiflora Cagra.2235s0034 I 0.720
Carubv10018465m.g Capsella rubella Carubv10018465m.g I 0.720
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.719
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I 0.718
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.718
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.718
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I 0.718
GSMUA_Achr8G30850_001 Musa acuminata GSMUA_Achr8G30850_001 I 0.718
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.718
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I 0.718
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I 0.718
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I 0.718
TCM_011067 Theobroma cacao TCM_011067 I 0.718
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.718
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.718
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.718
ARR14 Vitis vinifera VIT_01s0011g05830 I 0.718
27647.m000179 Ricinus communis 27647.m000179 I 0.718
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I 0.718
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I 0.718
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I 0.718
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I 0.718
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I 0.718
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I 0.718
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I 0.718
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I 0.717
estExt_fgenesh2_pg.C_Chr_100175 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_100175 I 0.717
PK02601.1 Cannabis sativa PK02601.1 I 0.710
PDK_20s13009423g003 Phoenix dactylifera PDK_20s13009423g003 I 0.710
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I 0.706
gene05178-v1.0-hybrid Fragaria vesca gene05178-v1.0-hybrid I 0.705
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I 0.700
GSMUA_Achr10G12590_001 Musa acuminata GSMUA_Achr10G12590_001 I 0.700
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I 0.700
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I 0.700
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I 0.700
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I 0.700
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I 0.700
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I 0.700
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I 0.700
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I 0.700
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I 0.700
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I 0.700
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I 0.700
OSTLU_5500 Ostreococcus lucimarinus OSTLU_5500 I 0.699
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I 0.699
estExt_fgenesh1_pg.C_Chr_16.00010090 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_16.00010090 D 0.699
e_gw1.10.288.1 Physcomitrella patens e_gw1.10.288.1 I 0.692
Bo1g141480 Brassica oleracea Bo1g141480 I 0.687
SapurV1A.0739s0030 Salix purpurea SapurV1A.0739s0030 I 0.685
GRMZM2G471600 Zea mays GRMZM2G471600 I 0.679
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I 0.679
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I 0.679
Cucsa.069440 Cucumis sativus Cucsa.069440 I 0.679
est_orfs.10_1861_4270447:1 Micromonas pusilla est_orfs.10_1861_4270447:1 I 0.679
estExt_fgenesh2_pg.C_Chr_120081 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_120081 I 0.679
Bo7g104190 Brassica oleracea Bo7g104190 I 0.678
Bra012743 Brassica rapa Bra012743 I 0.678
GLYMA09G04470 Glycine max GLYMA09G04470 I 0.676
CHLREDRAFT_113139 Chlamydomonas reinhardtii CHLREDRAFT_113139 I 0.675
cassava40494.m1 Manihot esculenta cassava40494.m1 I 0.672
e_gw1.16.93.1 Physcomitrella patens e_gw1.16.93.1 I 0.672
PDK_20s1451831g001 Phoenix dactylifera PDK_20s1451831g001 I 0.672
Bo1g010830 Brassica oleracea Bo1g010830 I 0.666
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.666
F775_26936 Aegilops tauschii F775_26936 I 0.665
GRMZM2G067702 Zea mays GRMZM2G067702 I 0.665
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.665
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.665
TRIUR3_24314 Triticum urartu TRIUR3_24314 I 0.665
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.665
mgf001591m Mimulus guttatus mgf001591m I 0.665
mgf014863m Mimulus guttatus mgf014863m I 0.665